FastQCFastQC Report
Sat 31 Dec 2022
SRR5847687.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847687.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83638
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAATCTCGTATGC12551.5005141203759056No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGGGTGAATCTCGTATGCCGTCT11341.3558430378536073No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGA1530.18293120351993114No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAA1260.15064922642817857No Hit
AACTGTGGGCCTGGTGGAACCCACTTTCATGTTCTTATCATTGTTTTGATCT1180.1410841961787704No Hit
ATGGTGGGGCTTTAAACCATCACCTCGGCCAAGGAGTATGTTGAAAAAGAAA1170.1398885673975944No Hit
GCGGATGGGGAGTCAGATGCTGTGGTACTTGGCATTTAACAACTAGAATTCA1090.13032353714818623No Hit
GCGTAAGGGAGTTAAAGAAAGGAAAAGAAAACAAAAAACGAATGAAAATAAC1040.12434539324230613No Hit
TTCATAGGGACAGACGGTCGGACTGACAGACGTGCAGACGGACAGAAGAGCA1030.1231497644611301No Hit
CGTACAGGGCTTTCTCTTCCGGTTCTAGGCGCTTCGGGAGCCGCGGCTTATG1030.1231497644611301No Hit
CAAGAAGGGTGGAAATAAAAATTATCATGGGGAAATGTATAGGCTATTTCAT1010.12075850689877807No Hit
GGATATGGGGAATTTCGAAAGAAATAATTGGCAAGATAATGAGAAAAGAAAA1010.12075850689877807No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGGGTGAAACTCGTATGC1010.12075850689877807No Hit
TACAAAGGGATTTCTTGTCATTGAAATGTATCTTTTATGTTTTTAAATGCAT1000.11956287811760204No Hit
CGTGTCGGGTCTGCACAGCAAAAGAAACTATGATCAAAGTGAACAGGCAACC990.11836724933642602No Hit
CTAACGTAGGGTGAACCACTGGGTGGGAAACTTTTGGAAGAATACACCCAGC990.11836724933642602No Hit
CTAAGATAGGGATTGTCTTTTAATATTGAGCAAATAGTGAAAAGTATTAATG970.11597599177407397No Hit
GTTTATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC970.11597599177407397No Hit
CTGGTAGGGATATATTCCTGGGGTTGAATCTCCAGTGATCTGTAAAATCTTA960.11478036299289796No Hit
TAGTAGGGGTAGCTGTATACACTGCCATAGCTGAAAAACTCCAGTGTATGCT960.11478036299289796No Hit
CAACCTGGGATACAAATATTTGAAAGATATTTATTCAGGCTGAAGATTATGG950.11358473421172195No Hit
ATAGGAGGGGCTTGGGGAAATCCTGTCAGGATGAAAAGGAAGTTGAGATTTT950.11358473421172195No Hit
CGTTTGGGGGGAAATCCTAAAGGCCGCGGAGTCGGCGGTGTTGTAGGTAGCG950.11358473421172195No Hit
CACCTAGGGGAATGCAGAGCCAAAGCATAAAGATGGAAATAAAAGAATTGCA950.11358473421172195No Hit
TCTGCGGGCACAACTAAAGTTAATATTTGTTTATGCCATTAAATATTTGTTT940.11238910543054594No Hit
TCGCGGGGAAGATTAGAGAGTGAATAATCAGGAGAGTTTGTTTTTTTCAAAC930.1111934766493699No Hit
GCGTAATGGGTATATGCAGATTATGCCCGGAGTTTGAAGAACCTCGGTTTTA930.1111934766493699No Hit
CAATTAGGGTTACTGGAATTACAAAACCTATTTTTCCTTTAAATTTCAGCTT930.1111934766493699No Hit
TAACTTGGGAAGAGTCATACAGTTAAAAGTAAAGGGATGGGGAAAGATATGC920.10999784786819389No Hit
TAAAACGGGCAAGGAGGGGATTGCATTACAAATTCTGGTTATGACAGCTCCA920.10999784786819389No Hit
GCCAAGGATCTGTCCTCTGGAATGACTCTCCTGTCCCTAAAGGGGTTAAGAG920.10999784786819389No Hit
CTCTCTGGTGTGGCTGCACGGCTCAACGGTTCCCTTGATTTCTTCTCCTTGG920.10999784786819389No Hit
TATGCTGGGAAGGAGCGCATTGATACTAGAAATGAGTTGGAAAGCTATGCCT910.10880221908701787No Hit
AATTATGGGCAGGAACCTCAGGGACACTGGCATAACTGTTCTAGAGTCAGAA900.10760659030584184No Hit
CTAGACCGGGTCCTGGCTAGGTGTGTTGTCCATAGTTTTGTTGTTGTTGTTG900.10760659030584184No Hit
TGCAATGGGGCAGCGAAGCGAGGAGCAGCGATGGACGGTCGGGTGCAGCTGA900.10760659030584184No Hit
TATATCGGGAAGCTAAAATTTAATTTTATTTCCTCTTTATTGATTGAATATA890.10641096152466582No Hit
GGTAAGGGGTAAGCTGGGGGCTAAGAATCTTGGCTTTTAATTTTTAAAGGTT890.10641096152466582No Hit
ACTATCGGGCTTCGGCTGGGAGTTCATAATTTTCTGTTGCAAAGGGATGAAG880.1052153327434898No Hit
AGGCAGGGGTGTCCCAGCTAGTTCACTCCTTTCGCCGTGCGTGGTGGAGGCT880.1052153327434898No Hit
AAGTCCGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT880.1052153327434898No Hit
GCACTGGTATGATTGATGATGTGAAAACCTAAATTACTTGCAGCATAGTATT880.1052153327434898No Hit
CTGGATTTGGGCATGGCACACGCATTTCCTGAATGTACAAAGAAATGCTGGC880.1052153327434898No Hit
TAAGTGGGGATTAGTTGTTATGACCTTGAGCAAGTTACTTACTATCTTCCTT880.1052153327434898No Hit
GTGCGCTGGGAGATGGTTAAGACAACAACCAACCATCTCGTCAGATAAAAGC880.1052153327434898No Hit
ATATGTGGGTCTATTTGATGAATGAATTCATAAAATCTTAGGTTACAAAATG880.1052153327434898No Hit
ACAATAGGGCGGTTGCTTTTGAGTTTTACTCATTTGGATATATTAAGATGCA880.1052153327434898No Hit
GACATGGGGATGATTTTGGTTATATGCAGCTTTTGACTAGCATGTATTGTGT880.1052153327434898No Hit
ACGTAAGGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGA870.10401970396231378No Hit
GGTGAAGGGGATTGGAAAGAAACTTAAATATTATGAGCATAAAGTAGAATGG870.10401970396231378No Hit
ACACGGGGACATTAACCGGCAGGATGTCGGAGGTGCGGCTGCCACCGCTACG870.10401970396231378No Hit
GTATAAGGGCTGATTTTTCAATTTAACATCTTCCACTTAGCTTTTTTCATAA870.10401970396231378No Hit
AATGGTGGGATCCGCCTGCCTTGGCCTTCCGAAGTGCTGGGATTAACAGGCG870.10401970396231378No Hit
AAAGGCGGGACCACATTCTTTGTAGCTTCAACACTTTAGGACTAAGGCATGC870.10401970396231378No Hit
GAACTAGGGAAGACACAATCGGGCATATATTTTCAAGTAGACTCTATTCTCC860.10282407518113776No Hit
TGGGCTGGGATGGAGATATTAATATTCTGTTCCAACTAACTATACCAATATG860.10282407518113776No Hit
TGCCTGGGGCAAGAACTGTTTATAGAAGCTTGAGAATGGGGTAAAAATTTCT860.10282407518113776No Hit
AGAATGGGGAATATAAACATTCCAAAATCTGAGATACTTCTGGTCCCAAGGA860.10282407518113776No Hit
AGCCCAGGCTGGTCTCAAATTTGTGGCCTCAAGCAATCCTTCCACCTCAGAC860.10282407518113776No Hit
CGCTATGGGAAGCAGAGATGTGGATTCTGAAATAAGGTTAGAGTCAAGTTTA860.10282407518113776No Hit
AGATGGGGGGCCTACAAGAAATACTAAAGAACATCTTCAGATGAAAGAAAAA860.10282407518113776No Hit
GATTCAGGGACCCACCCTTATGAGATCTCCAGAACTAGACGCCATGGCTGCA850.10162844639996174No Hit
TGGTACGGGCAGTCGGGTTGATTTCCTCATCTTCTATTTGATGGGCTAACTG850.10162844639996174No Hit
ACATATAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCAC850.10162844639996174No Hit
ATCGCTGGGAAGATCACTAGCTTCGAGGAAGCCAAGGGCTTAGACCGAATTA850.10162844639996174No Hit
TTTTATGGGACCTCCAGATACTACAGTTCTGTAGGCAAAGACTGCAGCAAAA850.10162844639996174No Hit
GCTTTAGGGAAAAGCCAAAATTGACAAATGGGATTTAATTAAACTAAAGAGC850.10162844639996174No Hit
AATCTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC840.10043281761878571No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)