FastQCFastQC Report
Sat 31 Dec 2022
SRR5847503.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847503.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130250
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGCCGTCT7380.5666026871401152No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCTCGTATGC6190.4752399232245681No Hit
GGGTGCAGATCTCCAAAAGAATGACAGAAAGAAAGAGGGAGTGGTGGAAAGA1720.13205374280230328No Hit
TGCGGGGGTGGTAAAACAAGTCCTGCCAGATTCCTATCTCAGGAGCAACAGA1570.12053742802303263No Hit
CTGTTAGGGTGGCCCTACTGCGCAGAAGCATTCAGATGTCACTTGATGATCT1510.11593090211132438No Hit
CTTATACACATCTCCGAGCCCACGAGACACCCGTAAATCCTGTCTCTTATAC1500.11516314779270634No Hit
TGTGCAGGGAGCCTTTCAGATCTAAGCTGCTTTAAATAACAGTATCACTTAG1490.11439539347408828No Hit
CCTAACAGGGGGGTCCCAATGGGAGGTAATTGAATCATGGGGGTGGTTACCG1480.11362763915547026No Hit
AAAGGCTGGGAACTGAGAGCTAAAGAGACTAGAAAAGAGATAAGCTGCCAAC1460.11209213051823416No Hit
GTCAGCGGGAGACATGTATTTCTTGCACAGCTAATAGAAGACAAAGTTGAAA1440.11055662188099809No Hit
CACACTGGGTGCGTTTCATAAAAAAATTTAGTAAAAGATAAACATGAGGACA1440.11055662188099809No Hit
AGCAACGGGTATCATAAAGCAAACACAAGGGAATTTAAAATCATGTCATAAT1420.10902111324376199No Hit
TATCTAGGGCATCAACACATAATCACTAATTTTTCCAAGAACACATGTGCAG1410.10825335892514397No Hit
TAAAATGGGTGATACTGGAATCTTGGGAAGTTTCTTACTCATATCACAATAT1380.10595009596928982No Hit
ATCTTAGGGTAAATAATCTAAGTTTCCACATTAAGAAGCTAGAAAAAGAGAA1370.10518234165067179No Hit
AGTAGCGGGAATATAGGATATTTCCATGTATCATGATGGTATCAGAAATTTT1370.10518234165067179No Hit
CTAAAGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1350.10364683301343569No Hit
ACACCTGGGCTTGAAAATTTTTGAGGAAGTGTTTCTGAAATATTTAAAAATA1350.10364683301343569No Hit
AAACACGGGGCCTTTGGATAAATTTCTATTAAAATCCTTTGCCTTTGTCTCT1330.10211132437619962No Hit
CGGCTCGGGACGCTCTTCCGATCTGGTACTGGGTTCCTAAACAAAATAACAC1330.10211132437619962No Hit
TAAGCGAGGGAGATACCAAAATATTCAAATGGAAATATCAAAAAACTTCTGT1330.10211132437619962No Hit
CTGGCCGGGGAAGAAGCGCTACCCCACGACGTTCGTTATGGTGGTCATGTTG1330.10211132437619962No Hit
GTCAGTGGGACCAGTGTCTAGAAAGTTAAACAACTGTTTTGTGTCTTAAGTG1330.10211132437619962No Hit
AGGTTAGGGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAAATTAGAGA1320.10134357005758157No Hit
GCGAATGGGAGTTCAACCTGCTTCAGCTGGATCCTGATTGCAGAGGATGCTG1310.10057581573896353No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)