FastQCFastQC Report
Sat 31 Dec 2022
SRR5847357.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847357.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124286
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGCCGTCT4800.38620600872181904No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGCAAGAATCTCGTATGC3370.2711488019567771No Hit
CACATTGGGATAGGTGCACTGTAGACAATAGATTACAGGAGAGAGATTTTGA1860.14965482837970487No Hit
ATCACAGGGATTCCTGGATGCATTTTGCTTTTTATTAGTTTCCAGATAAAAA1570.126321548686095No Hit
AAACTGGGGGATGTGGTAAACAACATCTCTAAAATCTGATAAGAAAGAGAAT1480.11908018602256086No Hit
CAACTGGGATAGAAGGGCATTGCAACAACATACATTGCTTGGCCAAAGCCAT1460.11747099431955328No Hit
TACATAGGGACTAGTACAGTAAGGAATCTTGCTGTTTAGAGTAAGCTCAACT1460.11747099431955328No Hit
GCCAAAGGGAAGCAGCAGGTAGCTTACTTTGACTGGTTTGGAATCGCTTATC1440.11586180261654572No Hit
TAGCACGGGAAGATATAATTTCCAAGGGATTTGACTTTTTTCCTACTCTATC1420.11425261091353814No Hit
AGTTTAGGGCAAGTAAATGAAGGAAAACAGAATTCATTTTCATTATGGGAAA1400.11264341921053056No Hit
GTGCGTGGGAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTA1380.11103422750752298No Hit
CATCGCGGGATCATGCTAATTTCTTATCTTTGTAATATTATTCATAAAGAAG1380.11103422750752298No Hit
CGGTTTGGGTATGACTGACAGCCAGGCAATCTGAGATATTGTCTCAACTCCA1370.11022963165601919No Hit
TACAAAGGGCTGTCCTTCTCATGTGGCATTTTTAGGATCTGGTAATGATGCT1370.11022963165601919No Hit
TAATTAGGGATTTTTAAGAAAGAAAATTGCATTGATACTAAATATTGTGGCA1360.1094250358045154No Hit
CCGCCGGGAAAGCCAATTTATAGGAAATACAAAAGACAGAGGAACATGTTTG1350.1086204399530116No Hit
CGCTAGCGGGTAATACTCAGTATGCACAAAAATCATGTGTAGCACTTGTAAA1340.10781584410150781No Hit
GAACAAGGATTGCTGGCTACAACTGAGTCAGCAAGACCTACGCCTGCACAAT1340.10781584410150781No Hit
ATGCCTGGGATGAACAGGACGTTGACAAGAGGTTTGGGAACACTGAAGAAAT1330.10701124825000402No Hit
GATTCAGGGACTGTGAGACCTCACTGTTTCCTTATGCTCATTTTTCCCTTTA1320.10620665239850023No Hit
AGATCTGGGCACTATAATTGCTAAGTAAAATAAAACAGGGAATTGCAACTTT1300.10459746069549265No Hit
GCTAGTGGGAAGGCTGATCAGATTACTGGTCACCACCAAATAATTGTTGATT1290.10379286484398886No Hit
CTAGAGGGGGATGAAGAGGGCATCATTGAAGGATTTTAAACAGGAAAGTTTC1290.10379286484398886No Hit
ACTCAGGGTGGTTGTTTCTCACTGCTACAATTGTATTTTATGACTTTTAAGT1290.10379286484398886No Hit
TAAAACGGGATGTTTGTATTTGGCCATTTACTGTAATCACATTTTTATATCT1270.10218367314098128No Hit
CTAGTAGGGGTGGGCGGTTCGGGAGATACCAAAGGAGAAAAAGTACCACTGT1270.10218367314098128No Hit
CACTGGGGGCTACTTCTGGGGTGTCGGTGATTTTCTATGTTACATATCTAAC1260.1013790772894775No Hit
TGCATGGGGTAAGGAAAACAAGAATGTTGTCTTCTAACTCTGACATTATACC1260.1013790772894775No Hit
TTCGAGGGGAGATCTTTAAGAGAAATCCTTTTCAAGAGTCGGAGGGCGAGTG1260.1013790772894775No Hit
ATAAGAGGGATTCCTTTTTATGATATCTTGTTTTTAATTCATGGGCACAACA1250.1005744814379737No Hit
GGCAATGGGGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1250.1005744814379737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)