FastQCFastQC Report
Sat 31 Dec 2022
SRR5847239.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847239.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179770
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGCCGTCT14100.7843355398564834No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTACTCGGATCTCGTATGC12210.6792012015352951No Hit
GATCACGGGCGATCTTTGCCTGGGACCCTGAAAATTCTCCAACTCAGGTTTT3030.16854870111809533No Hit
AAGATAGGGATTCTATAGTGCATGGACAGATACATACAACAACATTTTGTTT2460.13684151971964176No Hit
AGATGGGGGGACCGCGGTTCCCAGAGGGCGTGAGGGGCTGGCGTGGACACAC2240.12460366023251933No Hit
TGCTCTGGGCAGATATCAGGATAAAGCTATTGTTTCTGAAGAATGACTGCCA2080.11570339878733937No Hit
TATGTAGGGATGGGGAAAGTGATGCCAGCAGTTCCTTTTCATTATTCTATCT1980.11014073538410189No Hit
AGACTCGGGAACTAGAAAGATTATCTTTCCTCCAGGACCTGTTGTACTAGCG1970.10958446904377817No Hit
CCACTTGGGATGAACACTGATGTACAGATTATGTTTGCATTTCTGCTTTCAG1910.10624687100183568No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)