FastQCFastQC Report
Sat 31 Dec 2022
SRR5846428.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846428.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174717
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT12170.6965550003720302No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC11580.6627861055306582No Hit
CTCAAAGGGAATATGATGCAGCCACTATGGAAAACAGTATGGGGTTTTCTCA2570.14709501651241724No Hit
TTGAGCGGGCAAGATGGCGGTGTGTGTCCAAGATGGTGGTGCTTTTCCAAGA2080.1190496631695828No Hit
ATGTTCGGGTGAGGCAAAAACACAACACACCAAAACTTATGAATTGCAGCAA2020.11561553827046023No Hit
AAGCTTGGGTACTCAATTTGACATCAGTATTTGAATTCTTCTATCACCAGGA1950.1116090592214839No Hit
AGTATAGGGATGCCCAGGTGGGTGCTCTGGGCTGGAGCGAGGGCCAGGTTTT1890.1081749343223613No Hit
TTAGCAGGGATTGTCTCTCTTTGCAGATGACATGATTATATGTTTAGAAAAC1880.10760258017250754No Hit
GATGGAGGGATACCAGTTTTTGCATGAAAGGGCAGCAGCCGGCTGAACTAGA1880.10760258017250754No Hit
TTTGCTGGGAGCCCAGTATTGCCTTAAATAAAATCACATTTCATTTCTTGTT1860.10645787187280001No Hit
CTTTATGGGCAGATTTTCCTGGTACCCCACAAATAAAGCAAAAATATAGAAG1860.10645787187280001No Hit
ATTCAAGGGCAAGGCATGTGTGTGTTGCAGTGGGAGGTTCTTTGTAGTTTTC1840.10531316357309248No Hit
TTAATTGGGTATTAAAAAAGTGTGTTCCAAAGGCATTAAAATTATATATGTT1840.10531316357309248No Hit
CATGGTGGGTATCCTTCCACAGAATACATCAGAGCTATCAGTGCTTTGTACA1820.10416845527338496No Hit
GTTTAGGGGATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCGTGG1820.10416845527338496No Hit
GGCACAGGGGAAATAGACAAACCATTATTTGGGTACAACTAAAGGCAACTGG1820.10416845527338496No Hit
ATGAACGGGAGATATTGAAATGAAGTGTTGATGAACAAACATTTCATTCCTT1810.1035961011235312No Hit
ACTTAGGGGATCTGAGTGCTAGTTCTGCCATTACTATTAGATATCTGCTAGA1760.10073433037426238No Hit
TCAACAGGGAGAAAACTATTTTTGTCTCCATCTTTTTTACACACAGTATATT1750.10016197622440863No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)