FastQCFastQC Report
Sat 31 Dec 2022
SRR5846383.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846383.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228898
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC28341.2381060559725294No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT28091.2271841606304992No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT4920.21494290033115185No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3520.15378028641578345No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTC2680.11708271806656238No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2610.11402458737079398No Hit
TATTTAGGGTGTGATGCTTACTTTTTTATTAGCCACTTCATTGTTGATGTCT2520.11009270504766316No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)