FastQCFastQC Report
Sat 31 Dec 2022
SRR5846062.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846062.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81981
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT8180.9977921713567779No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC8070.9843744282211732No Hit
ACACATGGGCTTGCATTATTTGTGTGCTTTATGCTTTTTAGAAAATTTTTCC4850.5916004927971116No Hit
GGGCACGGGATTTCTGACCCATTTATTGGTATACTGTCACTTCCCTTTTTTT2430.2964101438138105No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCTGTC1470.17930984008489773No Hit
TCTTCGGGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCC1420.1732108659323502No Hit
TTGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1370.16711189177980265No Hit
TTACTTGGGAAGAATCAGATTGGAGATAAAGAAAAGCTGGGAGGTAAACTTT1320.1610129176272551No Hit
GCGTCAGGGGTGTCTCCCTAGCAAGATGGACACTGTGCAGGAAGGAAATGGG1300.15857332796623608No Hit
GGGCTGGGGAGTTAAAGCCATCTACCGAGAAGTGTTAGTTCAGTTGGAAGTG1280.15613373830521707No Hit
TCTCGGGGGCCGGCTGCAGGGATGGCGGGGAGGGGTAAGCTCATCGCAGTGA1250.15247435381368854No Hit
AGTCGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1230.15003476415266953No Hit
AGCTCCGGGAGATAAATGAGCAATTTCACAGATTCTTGCGGGAAAACTCAAA1230.15003476415266953No Hit
TCCTAGGGGGAAATAATTCCAGCAAGGATCAGCAGGTGAAAGGTTTTTGGGG1210.14759517449165052No Hit
TTCGTAGGGATCAAGGAATAGTTCAGAAAACGACTTCAGACCACAGAGACAG1210.14759517449165052No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACT1210.14759517449165052No Hit
CTCTTAGGGATAGAAACAAAGCAATTCCAGTAAGATATATAAAATATGTGCA1200.146375379661141No Hit
TTGCTGAGGGGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAG1200.146375379661141No Hit
TAAAAAGGGTATACACTCCCACCAACAATGTATTAGCATTCTCTTATAGACT1190.14515558483063148No Hit
TCAGCTGGGATTAGGCAAGAAACTGATTCACTGCAAAACTGGAAACCAAGGA1170.14271599516961248No Hit
TAGCTTGGGAGGCAGCACGTGGGCTCCAGCGCCGAGTTTATGGAGGCTTGGC1160.14149620033910298No Hit
CATGTTGGGCTTACAGCCTAGTAGCAGTCATTAATTCAGCACAAGACGCTCC1150.14027640550859347No Hit
TATTGCGGGCAGTGAAAATCTTTCTATGTTATTGCACTTTCCCCTAAGCCTT1150.14027640550859347No Hit
AAGACCGGGCATTGGGAACACTGGAGAGTGGAATTCAGTGTAATTCAAGGCT1150.14027640550859347No Hit
GAAGTAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1140.13905661067808395No Hit
TGCCGAGGGACCAGCAATCTGTAACATCCCTAGAAAATTGTCTAGAACACAG1140.13905661067808395No Hit
TTAGCTGGGATGATGATCGCAGACAGGAAAGGAGGAAATTATGATAAAAAGT1120.1366170210170649No Hit
CTACTGGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA1110.13539722618655542No Hit
GTGGCCGGGCAAAGGAACTTTCTATTGATCTTGAATGCAACACTGTTTCTCA1100.1341774313560459No Hit
GTATTTGGGTGACTCCTTCAAGTGTTCAGTAGTACAATAGGTAATCAATAAT1100.1341774313560459No Hit
GTCGACGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGG1100.1341774313560459No Hit
GATAGCGGGAGGTGCTTCCTCTATATCAAGTGAGTTTACTGATTTTAAAATC1090.1329576365255364No Hit
TTATCGGGGAAGGTGACTGGGTGAGAGGAGGCTGGCCTCTTCGGACTGTGTT1060.12929825203400788No Hit
TATTAAGGGTTCCTGGACCTGGTGTCCTGGTTGGGTCCAAGGTGATTTTACA1060.12929825203400788No Hit
GGAACTGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT1050.12807845720349836No Hit
AGTAATGGGATACATTTCAAAGAGACTGAAAAATAATTTACAAGTTTTCTAA1040.12685866237298887No Hit
GCACCGGGGAGCCCTGCTTTAATGGACTTTTTCAGAAGTGTTTTTGCTTGTG1040.12685866237298887No Hit
AGCAAAGGGAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCA1010.12319927788146035No Hit
TGGCGAGGGGCCTTTCGGCCGGAACCGCCATCTTCCAGTAATTCGCCAAAAT1010.12319927788146035No Hit
CTAGGCGGGATAAATCAAGCAGTAGTAAGATAGTGAGCATTCATACAAAAAT1010.12319927788146035No Hit
AGCTAAGGGTGAAGACCTTGGTATTAAATGCATGAGAAACCTTTTGCCATCT1010.12319927788146035No Hit
CCAGTGGGGTACAGAGAGATCAGCTAAAAGATTTTTTACCGTTTATGGTTAA1010.12319927788146035No Hit
ATCTTAGGGGATCTTGCGAGGGGATGGCCATTTTCATGATATTGATTCTTCC1000.12197948305095084No Hit
TCGCGCGGGGGGGAGCAGGTGGGCCCAGCCTGAGCGGGGCCTCTGCACAGCC990.12075968822044132No Hit
TGGCCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG980.11953989338993182No Hit
TACAAGCGGGGGCTAGTGGAAATCCTGAATTGCTTCCTTTCTGTGATCACTG980.11953989338993182No Hit
GTGGTTGGGAGTGGTAGACTGGATAAAGAAAATGTAGTACATATACACCATG980.11953989338993182No Hit
ACAAGGGGGCACTTCAAATATAATAATGTATACAGATTAAAAGGGAAAAGTT970.11832009855942231No Hit
TAAATAGGGAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGA970.11832009855942231No Hit
GTCGAAGGGGCCCTGAACTTGGCTCAGCTGCCGGGCTGCTCCGGTTGGAAAC970.11832009855942231No Hit
AGCATCGGGAGCCGAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGA970.11832009855942231No Hit
CTACCAGGGAAGAGCCTTTACCAGAAAAGGGGATCAAGTCGGCACTTAAGCA970.11832009855942231No Hit
GTTAAGGGGTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTG970.11832009855942231No Hit
TATAGCGGGTGTCTCCTCATTAATCTCTAGGGACTATTTGGTCACTTTTCTA950.1158805088984033No Hit
TGGGTAGGGCAAGAAGTTCAACTATATTCTTTTAGATATTATGTATTGTTTT950.1158805088984033No Hit
GAAGTGGGGTAAGATAAAGGATACTAAAAACAGCTAAGAACTCCAGGACTCA940.11466071406789378No Hit
GCCATGGGGATGTGCAAATGAATGCCACTTACCTCCATTCCACGGTATATAA940.11466071406789378No Hit
GTCTTTGGGTCGGGCCTGCCTCCTGCAAAAGAGGGGAAAGAGAAGAAGGAGA940.11466071406789378No Hit
TGCGGTGGGAGAAATATGCAGGTCACTTGGATATTAGATAATGAGGGAAAAT940.11466071406789378No Hit
AATGGTGGGGAAAAAAATAGCTGGGCATGGTGGTACACGTCTGTAGTCCCAG940.11466071406789378No Hit
TTTGTCGGGCATGGTTGACAATTCTTTTCTTTCAGCAGCTGAAAAATTTGGG930.11344091923738427No Hit
GCACCTGGGCATTTAAAATACTTGAACAAACAAGTGTGATATGTCTTTATCT930.11344091923738427No Hit
TCCGACAGGGTCTGTAGGCGGGAAGGAAAAATAGAGTATTATGGTTCAATGG930.11344091923738427No Hit
TAGCATGGGATGTGCATAAGTATTTAGCCAATACACATTTTGCTGACTTCTT930.11344091923738427No Hit
ATCTCAGGGATAGGATGGGGATGCAACTTTCAAGAGTTGCCTTGATTGGTAC920.11222112440687476No Hit
AAGACGGGGCAGCCTCATGAGTAGCTGGGATTGCAGGCACGTGCCACCGCGC920.11222112440687476No Hit
GGCATAGGGTCTGACAGAAACCAGAAACGCACTTTTGAGAAAAAGACATTTG920.11222112440687476No Hit
TAGTTTGGGTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAA920.11222112440687476No Hit
ATTACGGGATCTTGGGCTTCATTTTAGGCTCATGTGTCAGATCTGCATGCAT910.11100132957636524No Hit
TGAATAGGGTCAGTCCAGTTTTTAATCAGTTTTCTCCTTGAGGCTTGATCTC910.11100132957636524No Hit
AAAGAAGGGATGTACAATTTCTGTTTATTTCTGAAAACAGAGTTTGGTATGT910.11100132957636524No Hit
GCATTTGGGACAGGTGGTTAATCTGACATACATTGCAGTTACATGCATTATT910.11100132957636524No Hit
TACGCGGGGACTGGTGTTTATTACAGAGTTTGACATACATGGGTTCATTTGC900.10978153474585574No Hit
TCCATAGGGCTTGAAATCTGTGGGAGGAAGGATCCTTTTTCACTCATTCAAC900.10978153474585574No Hit
TGCATGGGGAATGTGGCAGAGGTGGTGGGAAGAAGAAAGTTGAGCTTTTTCC900.10978153474585574No Hit
ACTGCTGTGCAACATTAAGCCCCGCCGCTACCTGACTGTGGTCTTCGAGCAC900.10978153474585574No Hit
GTAATTGGGGATCTGTCTGGGCTGTGATGACGAATATTATGAAATGTGCCTT900.10978153474585574No Hit
GGCTTGGGGACTAACTAAATATATAAGATAATTTCAGTAAGAGAGAAGTGCT890.10856173991534623No Hit
CTCAGTGGGAGTAATGATAGTTGTACAACAATGTGAATGTACTTAATGCCAC890.10856173991534623No Hit
TGGTTCGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA890.10856173991534623No Hit
CCGTCAGGGGCCATCCACACTCCCAAGAGTTGACCTCAAAAAAATCACTTGC890.10856173991534623No Hit
ATATGTGGGATGAAGTCCTTGTATTCCTAGTCCCTAATAGGACATTTTAATA880.10734194508483673No Hit
TTACCTGGGACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAAT880.10734194508483673No Hit
ATGGCCGGGGATGTGGGCGGCCTTGGATGAGCAGATGCTGCAGGAGGGCATC880.10734194508483673No Hit
CCAACCGGCCGATCTGTGGATGGGAGATGGTCCAATGATGTCTTTCTTCTTC880.10734194508483673No Hit
AATCAAGGGAAGATCTTTATAAGGAGAACTACAAAACATTGATGAAAGAAAT880.10734194508483673No Hit
TTGGTTGGGTAAGGAGAATTTGTTGCACTTACTTTCCTTTTAGTGTAGATCT870.10612215025432722No Hit
TACGCCGGGATTTTAAGTGCATTGAGGATAGATGCAGGCGGGTGAGCTGCCC870.10612215025432722No Hit
GCCATAGGGACTAATAAGGAGGTTCCAAGACTTCCCTTGGTTTAATGAGAAC870.10612215025432722No Hit
ATGTCTGGAAAATACCATTTCTGCCTTTGAGTATTTCAGACCATTTTCTGTG870.10612215025432722No Hit
CGTCAAGGGATCTGTAATACATTCTAAAAGGATAATTGTGTCTGGGGCTCAA870.10612215025432722No Hit
AAAGTAGGGATTATTGATGACTAGACACCTGCTAGGATGTAAAGGCATTTAA860.1049023554238177No Hit
TTTAGCGGGGCCCAGTATTGCCTTAAATAAAATCACATTTCATTTCTTGTTT860.1049023554238177No Hit
CTCAATGGGAGAAGCAAAGACAAAATCTTACTTTCCAGAATCCCAAAATGAT860.1049023554238177No Hit
TATTTGGGGTGCGAGGGGGAATCAGATTGGAGATAAAGAAAAGCTGGGAGGT860.1049023554238177No Hit
GAACTAGGGGGAAAAGATGGAAATGTAATGTTTAACTCAAATGAAAGGAAAT850.1036825605933082No Hit
ACCTCAGGGAGTGATTGCAGAGTGCTTTATAAATATCACCTTATTTTATCGA850.1036825605933082No Hit
ATGATGGGGGTTTTCATGTGGAGTATTCAGTTTTGTAATAAGAGGGTTGTTC850.1036825605933082No Hit
GCACGGGGTCTATGCTGAGGGGTGTGAGGCTCTAGTTGTGAAGAAGCTACAA850.1036825605933082No Hit
TATGCGGGAGCACCTATTAGGTTTCATTTTGCTGTTTTCAGGAATGTAAGAA840.1024627657627987No Hit
CGTACTGGGGATCTTGTACGGGGTCCTGCTAGATTAATTTTTCAAAATTTTG840.1024627657627987No Hit
TCTGCAGGGGAGATATACATTGAAATCTTTAATCAGACATTCTCAAGTTTCA840.1024627657627987No Hit
GACAAAGGGATTACTATAGTAGCATATATCCAAAGATGAAATAAAATATTAC840.1024627657627987No Hit
ATAATGGGTATGCATTTTGTTTGAGCTTATTTTTCAAAATGAGAGTATATTA840.1024627657627987No Hit
CAAATAGGGAAAAATGTGGAAGCAACTTTGTATCTCAGGTCTTAATGAACAC830.10124297093228919No Hit
TGGGACGGGCACCCAAAGATGTGAAGTTTTGAGCAATTTTTAAATCCCACTG830.10124297093228919No Hit
TTTCAAGGGATTAGTACTGTTACTCCTCATTGCACAGGTGATAATTACCAAT830.10124297093228919No Hit
TTAGCTGGGGGACATGGGCGCCGAGGCCCTGCCCGGCCCCGACGAGGCCGCC830.10124297093228919No Hit
TTAATGGGGACTTCTGACAACTGCAATCCTCTCATCAGGTTAATAAGCTAGA830.10124297093228919No Hit
TTAGTTGGGAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA820.10002317610177969No Hit
GTTTATGGGGCTCTCTTTCCGGTGTGGAGTCTGGAGACGACGTGCAGAAATG820.10002317610177969No Hit
ACAGTTGGGTGGTCCCCTTCTAGAAGTACACATGGGCTTATACAGTAGTTCT820.10002317610177969No Hit
AACGCTGGGATGCACCCAGAGTCCACTCTGTTCTTAGCACTTTGTACTGAAA820.10002317610177969No Hit
TTAAGGGGGACTTACCATGTGACTTTTTATTACCAAATGCATCAGTAGTGGA820.10002317610177969No Hit
ATTATTGGGTGCTGCGCGTGCTCTCGCGCTTCGCGCCGCCCAACATGCAGGC820.10002317610177969No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)