FastQCFastQC Report
Sat 31 Dec 2022
SRR5846057.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846057.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences254656
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGC11600.45551646142246793No Hit
CTTATACACATCTCCGAGCCCACGAGACGGCAGACTATCTCGTATGCCGTCT11160.4382382508167882No Hit
AGACTGGGGTTCCTTTCTAACCCCCAAATGCCTAGATAAATGAGTGATTTTG2720.10681075647147524No Hit
GAGCATGGGACTTAAATTTAAATAGCCATGTGTACCTAGTGGCTACTGTTAT2710.1064180698668007No Hit
GATGCTGGGATTACAGGTGTTAGCCACCGCGCCTGACAGGATATCAAATTTC2650.10406195023875346No Hit
TTATTTGGGATCATCTGTCCCATCTTACACAGCAGGCCACAGAAACATCAAG2590.10170583061070622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)