FastQCFastQC Report
Sat 31 Dec 2022
SRR5845700.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845700.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177189
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGCCGTCT14500.8183352239698852No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCCATCTCGTATGC11890.671034883655306No Hit
TGCGTTGGGCAGGTCAATTTTTACAGGCACCCCACAGACCCTATAAATATGT2980.1681819977538109No Hit
CTAAAAGGGCGATCTTGTCGTGGGGAATTAGAGTGGGGATAATTACATTTTT2290.12924052847524395No Hit
ATTCATGGGGTGAATTTCAAAGGATCAAAATCGTACACAATGTATTCTTTGG1920.1083588710360124No Hit
GTCGTTGGGCTATGAAGCCAGTGTCACCCTAATACCAAAACCAGGAAAAGAC1890.10666576367607469No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCAATCC1890.10666576367607469No Hit
TAAATGGGGAGGAGCACCCGGACCGCTTCATCGAGTGCTACATTGCTGAGCA1870.10553702543611625No Hit
CATCTGGGGAGTCTGAGCAGGTCTGGAAACATGGCCTACTGAAGTGTAGTTG1790.10102207247628238No Hit
TTTAGAGGGACAGAGGCAAGGCCTCCTGTCTACAGCAGCTTCCTCAGTTTCC1780.10045770335630315No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)