FastQCFastQC Report
Sat 31 Dec 2022
SRR5845503.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845503.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202702
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC5230.2580142277826563No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT4720.2328541405610206No Hit
GATCATAGGGAAGCAGACTCAGACTGTCTCAGGATCAAAGCAACCCTCAATG2320.11445373010626438No Hit
CCATATGGGAGAGAATAAAAAGATCAAAGCCAAAGATAGGGATAAAATATTT2310.11396039506270288No Hit
CACGCAGGGGTGTTAAACAACAACAAACTACAACAAGCAGCAACAACAAACT2260.11149371984489546No Hit
TTCAATGGGGAGTTCAAAATGGCGACGGCGGCGGCAGCGGCGGCGGTGATGG2200.10853370958352655No Hit
GCTTTGGGGGGCTTCAGTAGAATCATCAGATCTAAAACTGCTGATAGCAACT2150.10606703436571914No Hit
CGCAGCGGGATGAATTAGAAAAAGAGAACTTACAACTGAAAGCTAAACTTCA2120.10458702923503468No Hit
CATAATCCCCAGTGCAGCCAGGGTTTGTGTGTCATCGTACTGGAGTAGAGGG2110.10409369419147319No Hit
GCATCAGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGAT2080.10261368906078876No Hit
TACCGTGGGATATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGTT2070.10212035401722726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)