FastQCFastQC Report
Sat 31 Dec 2022
SRR5845490.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5845490.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200851
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGC9470.47149379390692603No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAGTGTGATCTCGTATGCCGTCT8720.43415268034513144No Hit
AGGGCATTTTCTGATCTCCTCACTAAACTGTGAATGCTCCAAAGGTACGACC2210.11003181462875464No Hit
GAGAGAGGGCAAACAAAAATGGAAAAACAACATACAAAAACCTATGGGATAT2120.1055508810013393No Hit
GCTTGGGACCACAATGTGTACCGAAAGAGTTAGGTAGCTCAAGAGGTAACCA2080.10355935494471026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)