FastQCFastQC Report
Sat 31 Dec 2022
SRR5844827.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844827.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172083
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT7470.43409285054305186No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC7260.4218894370739701No Hit
GTTAGCGGGTTGATAGAGAGGGATATTGAAATCTCGAAATGTAATTGTGCAT2380.1383053526495935No Hit
CGTTCTGGGTGAGCAAAATAACCAGCAAGCATCATGGTGACAGGATCAAATT2000.11622298541982647No Hit
CTGTCACAGGGATAATATATTTTAACAACCTACCTTCTTACCAGAGATGATT1960.11389852571142996No Hit
AGTCTTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1750.10169511224234816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)