FastQCFastQC Report
Sat 31 Dec 2022
SRR5843934.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843934.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87485
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT4280.4892267245813568No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC3570.4080699548494027No Hit
GAACAAGGGCTCCAGGGGCAGCTTTGAGCAGAAGCTGAACTGGGCCTTCAAT1390.15888438017945933No Hit
GTATGAGGGATGGAAAAGTACAAAAGAAGTAACTCAAGAAGAAATTAAAAAT1380.15774132708464308No Hit
TAAACAGGGAGAGACAGCTTTGGGTATCACCATCAAACAAGTATCTGAAGAA1340.15316911470537806No Hit
GCAGCAGGGTAATAAAAGGTGTTCATTGACACCCCATTACTGGTGGTTGGAC1290.1474538492312968No Hit
AGCTGCGGGAAGAGTCAGTTGAAAGAAAGACAAGAGAGTCACATCTTAGCTT1270.14516774304166427No Hit
GGTTGCGGGAAGATAGATTTGTCTGGGGAAGAAGAATCACAATGCCACCAAT1250.14288163685203178No Hit
ACATTTGGGGCACTTGGCTAGGAATAATAATATTTTAAAACAACAACAACAA1230.14059553066239927No Hit
CGCTAGGGTGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTGGA1220.139452477567583No Hit
ACTTCAGGGCAGGTGCCCGCGACCCGCGTGTCCCCGTGCGCCTGGCCGCCTT1210.13830942447276676No Hit
ATGAAAGGGGAGTGAAGTAACTTCCACACTGTCAAGAGTTGACAGCATATTA1210.13830942447276676No Hit
GCTTGAGGGAAGCCCTTTTCAAAAGTTTTTGAATTTATAGAAAGCACCAATG1200.1371663713779505No Hit
CCAGATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1180.134880265188318No Hit
CTTTGAAGGGATTTCTCTATAGTTATTTTAAAATAGTAATCAATGCTATGTA1170.13373721209350176No Hit
TTAAGCAGGGAGGCTGGCTCTGTGGGACACTGTCAACAATGGGCCAGCCCGG1160.13259415899868549No Hit
CTTACAGAGGGGACCAGCACCATGGCGGTTGGCAAGAACAAGCGCCTTACGA1150.13145110590386924No Hit
AGCGATGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA1140.13030805280905297No Hit
AGTAGGGGTCATTTGATGTTTCAAATAGCAAAGATGCGGGAGCCACTGAGCC1130.12916499971423673No Hit
CATTTCGGGTACGAGGCTGCTGTTATTTGTATATGATTCTTAAAAATCAAGC1120.12802194661942048No Hit
GTTGTTGGGGACTCATCCAAATCTCTCTAAAACTTTCCAATGAAATCAGCCA1110.1268788935246042No Hit
CTACTTGGGGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATT1110.1268788935246042No Hit
CTTTCTCAGGGTACCGTGGCACACTTTCTGGTCACTTTGTACAATGTAGATT1110.1268788935246042No Hit
TTGCTGGGGCTGAGTAATTCTCTAACTGGAACTAAAGTGCGTTTTAGAAATT1100.12573584042978794No Hit
TCCTATGGGTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGC1100.12573584042978794No Hit
GATACAGGGGGAAACAGAAGTTCTGGGAGAAAACCCATGCAGACAGCAGGAG1100.12573584042978794No Hit
ATGAAGGGGGTGCACAAATACCTTGTTGCTATTATAACTTTGAAAAAAACAT1090.12459278733497171No Hit
TTTTAAGGGATGCATGAATTTTGGTACATGTGGTAGACCCGAAACCAATCCC1080.12344973424015546No Hit
TGTTTGGGGGAAAATTACTGAATCTGTCATGTGTTTTTAGTTGAAGTGAGAG1080.12344973424015546No Hit
CAACGGGAGAGGGAGCTGTTCAGCAAGCTGGGGGAGCTGGCTGTGGGCATGA1070.1223066811453392No Hit
AACAGGGGCTTTTAAAATATTACTTAAGAGAATCTCAAGCTGCTAAGGATCT1070.1223066811453392No Hit
TTTCAAGGGTAACCAAGGTTTCAGGTATCCTCCTGTCACCACCTCTACTATT1070.1223066811453392No Hit
ACTTTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1070.1223066811453392No Hit
GATAATGGGTCTGGCTTGTTAGATCTTCTCATTTGGCGTCCTTTCTCCGAAG1060.12116362805052294No Hit
GTAGGAGGGGAGACCACTGATTGTACTATAGAAATGATTTCTTGTAGGGATG1060.12116362805052294No Hit
TAACCAGGTAATGAAATGAGATGAAATAATGAAATGATGAAATAATGAAATG1060.12116362805052294No Hit
AAGCTTGGGGTGGTTAAATGTTGCTTTTCTTTGTTTTGTGAATGTTCTAGCT1060.12116362805052294No Hit
TGAAATGGGAGGAGCTACTGAGGGAAATCAGTGTCATTATTTAAAGTCACGC1050.1200205749557067No Hit
ACATCCGGGCCGATCTAAGGCAGGGGAAAGCAAACAACAGACAATCCAAAGA1050.1200205749557067No Hit
GAGGCAGGAGAATGGCATGAACCTGAGAGGCGGAGCTTGCAGTGAGCCGAGA1050.1200205749557067No Hit
ATTGCAGGGCGATCTTATCTAGGGACCTATGATACATCTGACCTGGCTGCTA1040.11887752186089044No Hit
GAGGCGGGAGAATTGCTTGAATCTGGGAGGCGGAGATTGCCGTGAGCCGAGA1040.11887752186089044No Hit
TAACCGGGTGTCAGATAACATAGCAAATAATGGAACATATCATCCTTGATAT1040.11887752186089044No Hit
GTTATAGGGACAGTCCCTTGTTCAACAGAGAGCTTTTGCTGGGAAGACGGCA1040.11887752186089044No Hit
TTATGGCGGGGGTTGAACTATGAACACTGTCATCAATGTTCAGTTCAAAAGC1030.11773446876607419No Hit
TAGCTTGGGTCCGATCTAGACGAGGGCAACCAACAAGTCATTATTACCCTCA1030.11773446876607419No Hit
GCGCAGAGGGACTGCTCTCCAAACTTCTATTTTATTGATTTATGCTCTAATT1020.11659141567125791No Hit
TCACTTGGGATGCTTGCTTTATTTACTTTTGTAATCTTGGATTTTGTAGCTT1020.11659141567125791No Hit
TGCTGAAGGGGGCAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTC1020.11659141567125791No Hit
TCTATGGGGATGAATAAGAAAGTGAAACAGCTTTATTGCTGCTAGGGAGAAA1020.11659141567125791No Hit
AGTACAGGGAAGGTGAACCAAAAGATCTATGACAACATGTGAGAAAGTGGCA1020.11659141567125791No Hit
GTTATGGGGATCTGATAAGGGGCTAATATCCAAAATATATAAGAAATTCCTA1010.11544836257644168No Hit
AAATCGGGAGGCGTGAACCACTGCGCCCGGCCAGCATGCATTTTAAAAGTGG1010.11544836257644168No Hit
TCTAGAGGGACAACCAGTCTTTTTAAAGGGCAAAAATGACTCAACACCTTTG1010.11544836257644168No Hit
GCCATGGGAGATTAATGCGGAAGACAACCATCTACATGAGTGGTATGGAGAG1010.11544836257644168No Hit
GTGGCCGGGAACCCAATGAAGGGAAGCTAAGAACCTTGATAAAAGGTTACAG1010.11544836257644168No Hit
AACTGTGGGGCTCTGTCAGTCGCGAGCGAACGACCAAGAGGGTGTTCGACTG1000.11430530948162543No Hit
GCTTAAGGGGGGACTATAAGCACGCACCACTATGTCTGGCTAATTTTTGTAT1000.11430530948162543No Hit
CCCCAGCTTAAATGTACTGGAACGTTTGTCAGTGAGTTTCATTTCCAAAGTT990.11316225638680916No Hit
GTTCATGGGCAAATCTATTTTTCTCACGTGTTTAAAAAACTGAAAAGTGACT990.11316225638680916No Hit
TAGCAGGGGTGCCAATTATATGTCTGGGTTTCTCTCCTTATTAGCTACAGGC990.11316225638680916No Hit
CTCATTGGGATCCAAGACTACATAGAGAAGGCAGTAAATGGCAGGGTTAGTC990.11316225638680916No Hit
TTTTGTGGGAAGACTCGTCATGAAGAATTTAAAAAATATGAAATGATGAAGG980.1120192032919929No Hit
GGCGCAGGGAGCATAAGTTAGCAATCGGTTCTTCCAAACTCCTGTGGGTTGA980.1120192032919929No Hit
GTTACAGGGAGTTCCCTAATTGTTGAATAATTAGCTGAACGTACAAATCTGA980.1120192032919929No Hit
TAACATGGGGTTAATGAAACTGTAAAATGAGATTAATAATAATACTTGGTTC970.11087615019717667No Hit
TCTCCAGGGATTTCATGTAGAATTAATTGCTAGTTATGATGCTTGTGGATAG970.11087615019717667No Hit
CATTTCGGGTGCAGGTAATTTTTTGTCTGCTAGTAGTGTTCTAGATTATGTC970.11087615019717667No Hit
AGCGCTGGGGAAGACAGTTTGGATGTTTCCTACAAAACTAAACACTTTTACC970.11087615019717667No Hit
CCAGCCTGGGCGACAGAGTGAGACTGCATCACAAGAAAAAAAATTTGCAAGG960.1097330971023604No Hit
TAGTACGGGTTGCCAGATGCAAATACCACAGACTCCAAGAAAACCCGAGTTG960.1097330971023604No Hit
ATTTAAGGGACCATGATAAGTCAGAATACTGGAGGCAAAAAGAAGACTCTGT960.1097330971023604No Hit
TATGCAGGGATATGCAAATGGCCAATAAGCAGGTGAAAAGATGCTCAGCATC960.1097330971023604No Hit
CTCATTGGGGCCTGATGTTAACTTACATCCCTTGAACATTCTCAGCTAGACT960.1097330971023604No Hit
TCAAGCAGGGTCCACATTTTTGAAAGGATTTAGTATGAATTTTCTAATTTTA950.10859004400754414No Hit
ATTGTCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA950.10859004400754414No Hit
TTCAGCGGGGCAGACTGCTGCGGTTCCTGGGTGGCGGCGGCATGGAGGCGCG950.10859004400754414No Hit
GGTACAGGGACTTTTCCTGTGAATGTGCTAACCACTTTTATTGGCATTTAAA950.10859004400754414No Hit
TCTACTGGGAAGGCCGTTTGTGGTCTACTGTCAGTACAAAGAGCCTCTGTTG950.10859004400754414No Hit
GTTTAGGGGACTGCAGGGCCCGGAGGTCAAGATGGTGGCTGTAAAACTAGGA950.10859004400754414No Hit
GCACTAGGGCAAAATCTCTTTCATATTTCCATACGGTCCATCAGGCATTTTT940.10744699091272789No Hit
GATGCAGGGTGCTGACAAGTTGGATGTGGGGTGTGAAAGAAAAATAGGGACT940.10744699091272789No Hit
GCGCTGGGAAGGTATTTGTTGCAACTTACTACATAGCATATACCCAAAATCA940.10744699091272789No Hit
TGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAG940.10744699091272789No Hit
AGCTCAGGGCGCTCTTCCGATCTAGGTGTGGGACTTGTTTATTTGAACTAAG940.10744699091272789No Hit
AGTACAGGGGTTGTTCTGAGATGATTTTAATATACACTACAGTGTTTTTGTA940.10744699091272789No Hit
AGAATAGGGTCCAAAAGAAATGAAATCACTATATCCAACAGATTTTTGCCCG940.10744699091272789No Hit
TTAGGGGGTTGAACTCCTGGGATCAAGCGACCCTCCTCCCTTGGCCTCCCAA930.10630393781791164No Hit
CCATCTGGGAAGTGAGAAGCGCCTCTGCCCGGCCATCTCATCTGGGAGGTGT930.10630393781791164No Hit
CGTTAAGGGATTATCACTTCTTCATATCCGATAATATTAAAGTTCCACAGAA930.10630393781791164No Hit
ATATCCGGGAACTAAAACTAACTGAGCAATCAAGTTTTATTTTTCTCAGATA930.10630393781791164No Hit
ACAAATGGGACAATAAAACAATGCTATTTATCTATCAGAATGTCTTAAACTG930.10630393781791164No Hit
CGTACTGGGATCTTCTCCACAAATTATTATAACTCTGCAAGTTTGGGCAAGT930.10630393781791164No Hit
GCATCAGGGAGACATGTTTATAAACAGAAATATATAATTGAAGTTGTATACT930.10630393781791164No Hit
CATCTTGGGAGATTTGTTGTAATTTCTCTTCTTTTTCCAATCATATCCTATT930.10630393781791164No Hit
GTCTCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA930.10630393781791164No Hit
ATCACAGGGAAGGCATTTAGCTTCATCCTTCTCATGCTGTTGACCCAGCTCT920.10516088472309539No Hit
GCAGAGGGTGTTTTAATTATCTGGAAGAAAAGTAAAGTGAGTGATGAGATTA920.10516088472309539No Hit
TGGCGATGGGGAATTCTGAGCTTCTTTCCTACTCTGAACTTTGAATACTACT920.10516088472309539No Hit
TGTCTAGGGGGTTGAGGCTGCAGTGAGCCGCGATGTCACCACTGCATTCCAA920.10516088472309539No Hit
TGCAAAGGGAGAATTGCCCCTGGTTGAGAACTACTAAATTAGATGAGGCAGT920.10516088472309539No Hit
TTGCTCGGGACCTACCGCTTAAAGATTCCTTTCATAATATTACTGCTCATTG920.10516088472309539No Hit
AGGTTGGGGAACGAGAGACTGCTTGCTGCGGCAGAGACGCCAGAGGTGCAGC920.10516088472309539No Hit
TCACATACGGGATCCTGCTGTGCAATAGAACAAGAACTTATTTCTCCTATCT920.10516088472309539No Hit
TCATCAGGGGTTTTCTAAGAGCCCTCAATTGCCTGCCTGTATTAATTTTAGT920.10516088472309539No Hit
AGTTCTGGGACAGCTATTTTAAACTAAGCATGAGAGAGAACCCCTGACCCCA920.10516088472309539No Hit
ATGGCTGGGACTCCAAGTCTCCTAATTTATTCATGCGGAGATGCATCTGCTA910.10401783162827913No Hit
CTTCAGGGATACTAAGGAACTGAGTAGAATTATTTGGGAATGCTGAGTACCT910.10401783162827913No Hit
TCTAATGGGAGTCTAATGCTCAGTTAGCGTTAATACTGAGAGAAGTATTTCG910.10401783162827913No Hit
ATATTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC910.10401783162827913No Hit
TAGAAAGGGTGTCAAAAACCAGAATTAGGTCAAGTTCATAGTTTCTGTAATT910.10401783162827913No Hit
GTCAGGGGACTTAAGAGTAGAACTTACACTTATTTTTTACCATTATCTTCTC910.10401783162827913No Hit
AGCTGTGGGATAGTGAGGAATATTCAAAATCTGGAAAGATATTCTATTTTTT910.10401783162827913No Hit
GGTGTTGGGACTCTAGCAGTTATCAATTGCAGTTTAATTATTTGTTTTATGT910.10401783162827913No Hit
TAAGCTGGGAAGTTGAATCAACATATGTTCTTTCATAGATGTTAAAAGGTTA910.10401783162827913No Hit
TTAAGGGCAAGAGCATCTGGAACAACAGATGGCTGCGCACCATCTCTGTGAT900.10287477853346287No Hit
GACCAAGGGCACCTCGTTTTATTAGTATGTTTTTAAAGAAGTTTTTCAAGTC900.10287477853346287No Hit
TGCTTTGGGCCTCGGAGGAGAGTGGAGAGAAAGTATGTTTCAAGAAGCAATG900.10287477853346287No Hit
TATCCTGGGGACAATAAACTGGAAAATCTAGAAGAAATGGAAAAATTCCGAG900.10287477853346287No Hit
GCATAGGGGAACTTTTAAATTGGAAATTATCTAGATACTTAATATCAATTAA890.10173172543864663No Hit
ATCATTGGGGAATTCTCTTCCTTAAGAAAGCTGTATAGTATTACGGGAAATA890.10173172543864663No Hit
TATGGTGGGCTGGCTTAGTGCCACCCACCTTTGCCACAAAGCTAGGATGGTT890.10173172543864663No Hit
AATATGGGGATAGACCCAGCTCCTCATAGTGCCAAAAAGAAATTGAGGCCCG890.10173172543864663No Hit
TCTTTGGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA890.10173172543864663No Hit
CTCTGTGGGCACGTGCTTGACATTCACATGCGGCTAGTGGCTACCATACTGG890.10173172543864663No Hit
TGAGATGGGACAGAAAAGTGGAGGAAAAAAAATCATATCCCCACCATCCAAA880.10058867234383037No Hit
ATTATAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA880.10058867234383037No Hit
TTTTATGGGATATAAATTACACCAGAGCTTCATATTAATGATACTAACTGGC880.10058867234383037No Hit
ATTTCAGGGCATGATCTATTGCACCAAGTCTGTCATTCTCCGCATCGAGTAC880.10058867234383037No Hit
AGGCCTAGGGTAAAAAAGATGGTAAAAGAGAAATATTAAATTAATGAACAGC880.10058867234383037No Hit
GGTGTGGGCCATGGACTTATCTGGAGATGTTTGGCTGCAGAGAGGAGAGAAG880.10058867234383037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)