FastQCFastQC Report
Sat 31 Dec 2022
SRR5843499.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843499.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44112
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACATTGGGGTCGTCGGGCGTGGCCGTCCGGAAGGCGAAGGCAGCG680.15415306492564382No Hit
CAAATTGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT630.14281828073993472No Hit
GAATATGGGGTATACAGACTGGTTGGGCGCTACTCCCTGAGTATGG600.13601741022850924No Hit
CTTGTGGGGAATATACAAGAATATAGTGTGCAAAATTGAGGGGCAA600.13601741022850924No Hit
GTATTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT570.1292165397170838No Hit
GCTCAAGGGCAGCCACCACGGTCCTCTACTGCAAAAGTAACTATCA560.12694958287994199No Hit
TATTTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.12468262604280013No Hit
CATAGTGGGGATTGAATACTGCCACAGCAAAGGCATCGTGGTGACA550.12468262604280013No Hit
ACTCGCGGGCGTGGCAGAGGGAAGGAAAGGGGCGAGTGGGCTGGGC540.12241566920565831No Hit
CATCAAGGGAATGTGGAGCAGCAAGAGGCTGAGCCCTCGTCCTTGC540.12241566920565831No Hit
CACATAGGGGGTTGGTGAGTGGGCTCCTACCGACCGAGGTTTAGGC540.12241566920565831No Hit
TTACGGGAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCG540.12241566920565831No Hit
AGCATGGGGACTGTGATTTGTACTCACTGCCCCAGTTCCCCAACTG540.12241566920565831No Hit
TCAATCAGGGGGCAGAGAAAGAGAGCGAGAAAAACGATTCAGCTTC530.1201487123685165No Hit
TCTAATAGGGGAAGATGACAAAAAGAATAATCTCTTCTGCTGGGAG530.1201487123685165No Hit
CAAACAGGGAACTCCCTGCCAACACAAGAGCATTTATGGCTTGAGG530.1201487123685165No Hit
TTTTATGGGGTGTGGCTGGAGGATGGGCCGGGGGCAATGCCAAATC520.11788175553137467No Hit
CTGGCTGGGAAGTTAACCAATTAGATGAGAGACATGTTAACCAATC520.11788175553137467No Hit
GTTAGTGGGGTTCCGAGCGGGCTTCTCCCCCTCCTCCGACGGGCCC520.11788175553137467No Hit
CGCAATGGGATTGTGGATGCAGTTTATGTACCTGTAATTCATAATG510.11561479869423286No Hit
GCGCTATGGGGAGCTGAGCTGGAACCAGGCCATGGATGAGGGGTGG510.11561479869423286No Hit
GAACCTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG510.11561479869423286No Hit
AAACCTGGGAAGTTGCTAAAACTTTGTTTTAGACAAGGTCTTGCTA510.11561479869423286No Hit
TGGATGGGGAGGTTGATCCAGTGCTCAGTACCAGTACCTCCATGTG500.11334784185709104No Hit
CAATTAGGGGCACTTAACTGATTTCTCTGACAGCCCATCTAGTCTC500.11334784185709104No Hit
CATTGCGGGGCCAGTGGCCTCGACCCACTGGACTCTGCGCGCTCGC500.11334784185709104No Hit
TTCCTCGGGACCTGCTGGCTGAGTACTGCGAGTGGCTCCCAAAGGC500.11334784185709104No Hit
CACGCGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC490.11108088501994923No Hit
AATCCTGGGATTGCAGCAGTTCCAATATAGACAGCATCTGCTCCTA490.11108088501994923No Hit
ATCCTCGGGAACAAGAAAGAAGTAACAGTTGAGTGCCATATTGCTG490.11108088501994923No Hit
GGTACAGGGGAATTTAACAGAGTGATCATTCCAGTCAAACGAGGCG490.11108088501994923No Hit
TTCATAGGGTCAAGGCGGAGGGTCAGCGTTGCTACCGAGAGAAGAA480.1088139281828074No Hit
ACGCCAGGGGTTGTTCAAAGACGAGTGTAAGCATAGGGGATAGAAA480.1088139281828074No Hit
ACTCTTGGGAAAGAACGTGTCGGTCAAAGATGTTAGACGAGGCAAT480.1088139281828074No Hit
TTTTATGGGGGCGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACG480.1088139281828074No Hit
CTCTGGGGGCCACTCTGTGGCTTTGCCCACTGCTTCTGGCTGTGGG480.1088139281828074No Hit
TTAACCTGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAG470.10654697134566558No Hit
AAGCGCGGGGTATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTA470.10654697134566558No Hit
ATCGTTGGGCCAGGAACACGGGCCTATTCGGAGTTGTTCTGTCTTT470.10654697134566558No Hit
GTTCTAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT470.10654697134566558No Hit
CCGTATGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTC470.10654697134566558No Hit
AAATATGGGGCAACGTGTAAGGCATCAATCATGATGTCACCAAGAT470.10654697134566558No Hit
TATAGCGGGGCATCACCTGCTCATCCTCAGACGTCGGCTCTGCCCT470.10654697134566558No Hit
CTGCTTGGGGTTAGATGGGCTGGGTCGCATTCGGGACCAGCTTTCT470.10654697134566558No Hit
TAAAGTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG470.10654697134566558No Hit
TGAATCGGGGATGCTTGAAGACCCCAAAGGTCACCATGGCGTCCTC470.10654697134566558No Hit
CGCTAGGGAGATTCTTCAGGAGAGAGGCTCTCGAATGTAAGCGGAC460.10428001450852377No Hit
CTTTAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT460.10428001450852377No Hit
TGCCCTGGGACAGCGTTCTTTGTCAGTATTGTGGTAGTGCAGTGGG460.10428001450852377No Hit
GCGCTTGGGAAACTAAGGAAGTCAAAAGGTAAGCATTCGATCTGGT460.10428001450852377No Hit
CAAACCGGGGCCACTTCACTTCTGCCTTCGGGGCCGGCTTCTGCAC450.10201305767138194No Hit
TTACTTGGGACCAGTGGGCTGAACACTGCTCTAGTGCATTGATCCA450.10201305767138194No Hit
CGCTTAGGGGGTGCCGAGTGCTGACGGCCTCGGCCTCCTCTCTATA450.10201305767138194No Hit
TGTCATGGGAGTAGCGTGGTTGCGGTGAGGTTCTTGCGCTCCTGAA450.10201305767138194No Hit
GGTCCGGGGGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTG450.10201305767138194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)