FastQCFastQC Report
Sat 31 Dec 2022
SRR5843488.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843488.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55978
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1050.18757368966379648No Hit
CCAATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA900.16077744828325413No Hit
GCTGATGGGAGGCCACTGGGCCAGGCCTTTCTGGATTGCTGCTGCT830.14827253563900106No Hit
TGTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA830.14827253563900106No Hit
GATCCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT830.14827253563900106No Hit
TCTTGTGGGATGAATTATAATGTAAATATCTGATATCAGGATATAT820.1464861195469649No Hit
CCTTGCGGGATGTGATTCCTTTTTCTGTTTGCAAGAACACATGTAA800.14291328736289255No Hit
TGCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA800.14291328736289255No Hit
CGAGCAGGGAGATCTGCCCATTGAGCTACCCAGCTCAAGATCCGAT790.1411268712708564No Hit
CAAACAGGGGGTGGCATGCAGATCTTCGTGAAGACCCTGACCGGCA780.13934045517882027No Hit
GTAAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.13934045517882027No Hit
GGCAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.13934045517882027No Hit
TATATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.13934045517882027No Hit
GGTCTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA770.1375540390867841No Hit
GATACTGGGCCTGCAGGAGCATCAGGCTCTAATGGAAGAACTAAAT770.1375540390867841No Hit
GATTTAGGGGCCCAAAATGTGCCCCGGTATTTGCAAAATGGCGTCC770.1375540390867841No Hit
AGCGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.13576762299474793No Hit
TATGACTGGGGGTGCAGGAGACATGTCGGCGGGCAGCAGCTGCAGC760.13576762299474793No Hit
CCGCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC760.13576762299474793No Hit
CGCGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.13576762299474793No Hit
AAACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.13398120690271176No Hit
TCTCCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA750.13398120690271176No Hit
ACCTTAGGGTAATTCAATTAAACTATTAACCCTTGGCCTACTCACC740.13219479081067562No Hit
GCTTCAGGGGGCAGCTGAGGAGCGGAGGAAGACTCAGGAGGCTCAG730.13040837471863947No Hit
CGAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.1286219586266033No Hit
GCAACTGGGAGAAGGAGTCCCAGGCCTATTACGACGGGAGAAGATC720.1286219586266033No Hit
TACGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.1286219586266033No Hit
TTCTGGGGGATTCCTGTAATGGCTGCTTTCGGTCCGGCTGTGTCAC720.1286219586266033No Hit
TAGTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.1286219586266033No Hit
TTCTAAGGGGACGCTCTTCCGATCTGACACGGGTTGGGACATCTGT710.12683554253456716No Hit
ACTTCAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT710.12683554253456716No Hit
ATGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC710.12683554253456716No Hit
TCGCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.12683554253456716No Hit
AGCACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC710.12683554253456716No Hit
CTTAGCGGGCATTTTATCCGAGAAGTTGAGTTTTACTTTTGTTCCT710.12683554253456716No Hit
CAGTCAGGGGGAAATTTAAGAAAGTGGTGGCCGTGTTACACTGGTG700.125049126442531No Hit
AGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT700.125049126442531No Hit
AGGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT700.125049126442531No Hit
GTGCGAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA700.125049126442531No Hit
AAAACAGGGGAGTCACGGGAGTTTCTGTGTGATGTGTTCTGCATGA690.12326271035049484No Hit
TTCTTGGGGATCTGCTGACGGGGGACTCTTCCGGGGCCGGGGCCAA690.12326271035049484No Hit
GCCAGTTCCGCTTGCCTTTCAAGCCCACCACACCTGTTATCATGGT690.12326271035049484No Hit
GTCTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC690.12326271035049484No Hit
AAAGCGGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC690.12326271035049484No Hit
ATAAGTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.12147629425845868No Hit
CTCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.12147629425845868No Hit
TTGATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.12147629425845868No Hit
GAGTCTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11968987816642251No Hit
TGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11968987816642251No Hit
GTAGATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.11968987816642251No Hit
TAGAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.11968987816642251No Hit
TCGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11968987816642251No Hit
TAACTGAGGGGCCGCCATGGTGGCGTCTGTGCCGCTGCGGAATGTC670.11968987816642251No Hit
CACTCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA660.11790346207438637No Hit
CTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT660.11790346207438637No Hit
GATCTCGGGTCTAGCTCAGGGGGGAATTCTGGACATTAATTAGGGC660.11790346207438637No Hit
TATCCCGGGGTCCTGTAACAGGCTTTTGACGTTGTGTCTTTCCACT660.11790346207438637No Hit
CGCTACGGGCGGGCATCGTCGCTCTTCGTTGTTCGTCGACTTCTAG660.11790346207438637No Hit
AACTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.11790346207438637No Hit
GCTAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.11611704598235022No Hit
TTGCCAGGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGC650.11611704598235022No Hit
AGTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.11611704598235022No Hit
GGTTCAGGGGCCTTTTCCTCTTCCGGGGACGGTGCTCAGAGGCACT650.11611704598235022No Hit
TTACCAGGGCTGCCAGGACTGGCCACTGCCACTCCATTTAATAGTG650.11611704598235022No Hit
ACACATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.11611704598235022No Hit
AAATGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.11611704598235022No Hit
ACGCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC640.11433062989031405No Hit
CAGTCTGGGTGGTATTTTGGTTGCTACTTCTGTCTGCCCATCCTCT640.11433062989031405No Hit
AGTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.11433062989031405No Hit
CTACTTGGGCTGTGAACCACGCCAGGAGAGCCAACCTCCGGGGTGT640.11433062989031405No Hit
TACAAAGGGACCAGTACAAGGAGCTGCAGAGCTATGCGCAGGAGAT640.11433062989031405No Hit
CACCCTGGGGATGGTTTGGCTAAAAGTTGTTACAACTCAAGAGAAG640.11433062989031405No Hit
AGAGTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT640.11433062989031405No Hit
GAAGTGGGGGACTGGGAACGCTGTGCAAAATGGCGACGCCCAGTCT640.11433062989031405No Hit
GCTTTTAGGCAATAGTAAAAAACTACCCAGAAGGGCATCAAGCCGC640.11433062989031405No Hit
CCACTAGGGGCCGGCCCGGTGCTCAACCAGCTGCTCGCACCTTCCG640.11433062989031405No Hit
CTTTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.11433062989031405No Hit
CCCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.11433062989031405No Hit
TTCACGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG640.11433062989031405No Hit
TCCGTTGGGGGAGCAGCTGTGCAGGTTCCAGGGCCCCGTGCTGCTG640.11433062989031405No Hit
ATTTCAGGGGGCGTACAGACAACCGCGCCGGCTTTGGCTCCCCTCT640.11433062989031405No Hit
ATCTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.1125442137982779No Hit
ACGTGAGGGAAAACAGGATCAAACAACCCAACAGGATTAAACTCAG630.1125442137982779No Hit
TGTTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.1125442137982779No Hit
TTTAGTGGGGGACCGCCATTTTGTCCTATGCTGCTGCCACTGCCAC630.1125442137982779No Hit
CTTAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.1125442137982779No Hit
TAGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC630.1125442137982779No Hit
TTGACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.1125442137982779No Hit
TCTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCA630.1125442137982779No Hit
CTACCGGGGGTTTGGCCAAGGAGCAGCGACTCAACTTTGGGGATGA620.11075779770624172No Hit
CTCGCAGGGGGACGAGGAAGAGAAGAAGAAAATGGAGGAGAGCAAG620.11075779770624172No Hit
AACTCAGGGGGAGAAAGCCAGAGCCGGTTTGCAGGCAACGCTGTGG620.11075779770624172No Hit
AAACCAGGGGTGGGTGGGGGAGCTGAGCGCTCAGACCCAGGGCTAA620.11075779770624172No Hit
CGCGCAGGGGCCCGGAAGCTCCACCACCTCCCCCCAGAGAAGTCGC620.11075779770624172No Hit
GTTTTGGGGGAAGCTCTCCCCGTGAGCAGCTGACTGCACAGCTATG620.11075779770624172No Hit
TTGGCGGGGTATCTTTAGCCCCACCCTCCCATGACATCACACAAGA620.11075779770624172No Hit
ATCACTGGGGTCTAGGTGTCTGTCTGTCTGTTTCCTGCCCGGGGCA620.11075779770624172No Hit
TTTAGAGGGCCTACAACTTGCGCCAATTATCGAGCTGGTAGACGAC620.11075779770624172No Hit
CGCTCAGGGGCAACGCCGCCTTGTCGAGATGAAACCCGCAGTGGAT620.11075779770624172No Hit
TCGACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC620.11075779770624172No Hit
AACGTCGGGGAAGCAGAACCTGTCTAGGAGCTGGCATGATGTGCAG620.11075779770624172No Hit
AATTATGGGAACCGCCGCATACGGCCGATTGTCGCAGCCCGGGTCG620.11075779770624172No Hit
GCATTCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG620.11075779770624172No Hit
ACAAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.11075779770624172No Hit
AACCCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC610.10897138161420558No Hit
TATTATGGGTGAAGGGAAAACCTGCTCGAAGCTGAATTGGTGGACT610.10897138161420558No Hit
CCTGCAGGGAGATGAACGGGCTTGCAGCCCAGGGCAGATATGAAGG610.10897138161420558No Hit
TTCTATGGGGGGGTTCCGGAGAGTGCACATCGAGACTGTGGCCATG610.10897138161420558No Hit
TCCTGGGGGAGACCTGAACATCAACATGACCTCCCCAATGGGCACC610.10897138161420558No Hit
TCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10897138161420558No Hit
TGCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10897138161420558No Hit
TTCACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC610.10897138161420558No Hit
CATCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10718496552216944No Hit
CTAGCTGGGACCGACGGGGAAACCACCACTCAAGGGCTGGATGGGC600.10718496552216944No Hit
TCTCCAGGGGTTTTTAGGATATTGTGAGTAATATAGATTGGCGCTA600.10718496552216944No Hit
CTTATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10718496552216944No Hit
TAAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10718496552216944No Hit
CCTGCGGGGATCCTGGTGATGTGTTCTACCTACACTCCCGCCTGCT600.10718496552216944No Hit
ATAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.10718496552216944No Hit
AGTTAAAGGGAACCATTTGAACTATTCTACCAGCTGTAATCCTTAT600.10718496552216944No Hit
CTCGCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA600.10718496552216944No Hit
TACTCCGGGAGAGGTCCCGCCGTACGCTGAGGACCACCTGAAACGG600.10718496552216944No Hit
AGCAGTGGGGACGCTCTTCCGATCTATAGTAGGGGGGAATTCTGGA600.10718496552216944No Hit
GTTCTAGGGGGGTACTGGTGCCACGTCCGTTGCTGTGCTGCGAATT600.10718496552216944No Hit
ACCTTGGGGGCGGCCGCGCCGGCGCGTCGAGCCAGAAGCAGCCGCC590.10539854943013326No Hit
GCCGGCGGGGATCTAGCACAGGGCATGCTTCCATGTTTGTTTCTGA590.10539854943013326No Hit
GGCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.10539854943013326No Hit
TCAGCTGGGTGTGACTTGAATTGGTAGAGTGCCTAGGTTACATAAG590.10539854943013326No Hit
GGACTTGGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAAC590.10539854943013326No Hit
TGTTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.10539854943013326No Hit
CGCCCGGGCAGGTCATCAAGCTTGACAGTGAGTGCTTTTACCTCTG590.10539854943013326No Hit
TGTCTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC590.10539854943013326No Hit
GGTGACGGGGAGAAACCTGTGTCCTCGTTGCTGTCCAGAACCCCGT590.10539854943013326No Hit
GACCAGGGGGTCAGGCAGTGGTGGCGCACGCCTTTAGTCCTCTGCC590.10539854943013326No Hit
AGCACCGGGGGACTTTGGACGTCCGCTCAGCCAGGTTGCAGAAGCG590.10539854943013326No Hit
TCCAATGGGGTGCAGAAGTATCGTTCTCTCTTCCCAGTAGACAACA590.10539854943013326No Hit
TTCTCAGGGGACTCTCAGGTCAAAATGGCGGGCCGATCTGCTGTTT580.10361213333809711No Hit
GCGGACGGGTATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC580.10361213333809711No Hit
GATTATGGGTGAAATCAACACACAGCTTTCCACTGTCATTCGCCAT580.10361213333809711No Hit
TAGCCCGGCGTGGAGGCAGGTGAATGCGATGGCTACAGGCTCCTTG580.10361213333809711No Hit
CACTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10361213333809711No Hit
GAATGCGGGCTTCTTAAACCTGAAGTGGAGTACTACTCTGGTTGCG580.10361213333809711No Hit
GGTGCGGGGGTTGGTGAAGCTGTTTGCCCTCTGGTTGTGGAGGAGT580.10361213333809711No Hit
CAACGCGGGGGAAAGATACAGGACAAGCCACAGCCCCTCAAAGCAT580.10361213333809711No Hit
TCTTGGGCACAAAAATCACAACATTCTGAAGTTTTTCGGCCATTGC580.10361213333809711No Hit
TCCCGGGGGGCACTTTTTACAGAAATATCCCAGAGACTGGGGGATG580.10361213333809711No Hit
ATCGCTGGGATCCCAATTCTCAGAGGTCCCGCCGTACGCTGAGGAC580.10361213333809711No Hit
TCATCAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG580.10361213333809711No Hit
CGCTAAGGGGATCTCAATACGGGGGGAATTCTCCAGATTACTTCCA580.10361213333809711No Hit
TATCTTGGGTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGG580.10361213333809711No Hit
AGTAGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA580.10361213333809711No Hit
CGTTTCGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC570.10182571724606095No Hit
TTATGGGGGCCCTTAGCCCTTTGGGTGTCGTTTGTGAAGGGGTGGA570.10182571724606095No Hit
TTGCTAGGGAGAGCGCGGAGGAGGACGGTAGCTCGGTCACGGCGTT570.10182571724606095No Hit
GGGCGGGGGGGCCATGCGCACAGGACATCTTAATGGACAAAGCCTT570.10182571724606095No Hit
GCCAAGGGGGCGTACTAAGACCCGTGTGCAGCAGCGGCGGCGGCGC570.10182571724606095No Hit
ATCACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT570.10182571724606095No Hit
GCCAGTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC560.10003930115402479No Hit
AAGCCAGGGCCGCCTACCAACTCTCAGTTTTTTGTAACAGTCCCAC560.10003930115402479No Hit
GCCTCATCTGGAGTCGATCTCGGGCGTCTGTCCCCTCCTCGTCGCT560.10003930115402479No Hit
TATTCAGGGGCCTGCCAAGACTGGTACCAGTCTCTTTCCTCTAGCC560.10003930115402479No Hit
GGTTTGGGGTCAAAATAAAGTTCACAACTGAGGCCATGTGGGACCA560.10003930115402479No Hit
TATTATGGGGGGGGCATCCAGCTTCCGGGAAGCCATGCGCATTGGA560.10003930115402479No Hit
TACTAAGGGACAGGAATTACTGAAGCAGTTAAGGAGATTACACTGG560.10003930115402479No Hit
TCACGAGGGGATCTCAACCTGGGGGGAATTCTGGACATTAATTAGG560.10003930115402479No Hit
CTAACAGGGGGTATCCTAATGTATACTCTTGCATCTGCAATATGTG560.10003930115402479No Hit
ACACTTGGGGTCGAATGAATTTGAGGGGGCTTCTCAGTAGACAAAG560.10003930115402479No Hit
TAAACAGGGATTCCTGTAATGGCTGCTTTCGGTCCGGCTGTGTCAC560.10003930115402479No Hit
ACTGGGGCAGATGCCTGTTATGAAGAACTGCTCAGGGCCATCAGTG560.10003930115402479No Hit
ATTTCAGGGGGGAAACAGTAGAGTAGGAGACTTTAAAATGGAGACC560.10003930115402479No Hit
AGTATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10003930115402479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)