FastQCFastQC Report
Sat 31 Dec 2022
SRR5843398.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843398.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39951
Sequences flagged as poor quality0
Sequence length46
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCTTGGGTGTGTGAAGAGACTGAGGCTGCACGGGAGGCCCCTGG770.19273610172461264No Hit
GCTGAGCGGCTTCTAGCATCCACACAGCAGGGATCCATTCTGCCTG760.19023303546844883No Hit
CTCTGGTGGGGACGGGATCATGGGGCTTCTGACCATTCTGAAGAAG640.16019624039448324No Hit
AAGCCCGGGCAGCCTGGGTGCACTGATGGAGATACGGACTTGGGGG570.14267477660133665No Hit
TGGCGAGGTTTTAAGAAGTCTTTTCTTTGTGGACAAGCACGGGGAT570.14267477660133665No Hit
TAGTTAGGGGTCCGCTGTAGAGGTGACCTGACTGCTGGAGACTGCC570.14267477660133665No Hit
CTACCTGGGGAATGAAAATACCGAAGATCAATACTCCCTGGTAGAA570.14267477660133665No Hit
AAACTGGGGGAGCCCGGCTGCGCGCGCATATGACACTCAGTTGAGG560.14017171034517284No Hit
TTACGTGGGGGGGCGCAGGGGCAGCTGGGAAGATGGCGGCCTGGGC560.14017171034517284No Hit
AGATTTGGGTAGTTCTTGTAATTGCTCATTTCTAGGTTCTGTTTTT540.13516557783284522No Hit
TTCAAGGGGAGATACAGTTGTTTGTCTCTAGACTACGCTGCGCTTC520.13015944532051765No Hit
TCCTTTGGGGGCTTTGAGCAGGAGCGCATCGGCCTGGCGGAGCTGC510.12765637906435384No Hit
CATGCAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG510.12765637906435384No Hit
AATTGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT510.12765637906435384No Hit
TATTCTGGGCTAGCACCGGGTAAGGGTTTCCACTCTGCACATTGTA500.12515331280819003No Hit
CTATTAGGGATACGCGGAGGATTCCAGCCCACTCTGGCAGCAAAGG500.12515331280819003No Hit
CTCTAAGGGCGCTGCTGTCAGCCATTGCGAGTGCTCTACACACCAG490.12265024655202623No Hit
GTTCTAGGGCAGTTTGGGGTTGAGAGGAAAGCAGAGGCGCCCAGAG490.12265024655202623No Hit
GCAACAGGGAGCTCCAGAAATGGCTACCGCGATGACAGTTTCCAGT490.12265024655202623No Hit
CGGGCTGGGAGAACGTGTTATGAAGAAATGTTGAAAGAAGGTTACA490.12265024655202623No Hit
GCTTGTGGGCACCTCTGACACCTACTACTCCCCCAGCTGTCACTCC490.12265024655202623No Hit
CTAGATGGGCATCATCGGCTTCATCCTTCAGATCTGCTGTCCAGAG490.12265024655202623No Hit
ATAAAAGGGTGGTATGCAAGGCAGTGGTGCTTACACAATATTTCCT480.12014718029586242No Hit
TAAAATGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT480.12014718029586242No Hit
CCTCCCGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA470.11764411403969863No Hit
TCAAAGGGGATCAATGGGAACATAAAGACAGTGACTGAGTACAAGA470.11764411403969863No Hit
CACAACGGGGGGAGGAGTCCTGGAGGGGCTGTTTGTTACGACAGGC470.11764411403969863No Hit
GTATATGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG470.11764411403969863No Hit
GCAGTCTATAACCCTGAGGCTGTGAATGAACCCAAGAAGAAGAAAT470.11764411403969863No Hit
TAACAAGGGGGCCTCTCTGTGGCAGACTTGGCTGAGAGCATAATGA460.11514104778353484No Hit
CTCACCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT460.11514104778353484No Hit
GTTTCTGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA460.11514104778353484No Hit
ATCAATGGGACACATGGGGTTGAAGTTCCCCGATGGATCTGAGAAG460.11514104778353484No Hit
CAATAGGGGATGCTACTTGGTCATACTAGAGAGCCAGGCAAGCTTG460.11514104778353484No Hit
TAACATGGGGACTTCCGCCCAGGAGCGAACGATTGCGCTCTTTACC460.11514104778353484No Hit
GTAATGGGGGTCCTGGCCTACTTCACATTCTGCCTGTGGATAATCC460.11514104778353484No Hit
TCTCAACGGGTCCACGGCAATCATGGTACCTGTGGGACTAGTGTTT460.11514104778353484No Hit
CCTTTAGGGGATAGAGGGAGAACCAGCTGATACCTCGGACACGGGA460.11514104778353484No Hit
GCTATAGGGGGCCACGCTACATCGTGGTGTATGTTGTATGGGCAGC460.11514104778353484No Hit
AGCTCAGGGGATCGCACCCGGAAGTGAAGCTACTCCGTAACGGAGC450.11263798152737103No Hit
GGCAACGGGGGTGGTCAGGAAGTCATGGAGGGAGACTAGTGCCTAG450.11263798152737103No Hit
CAATTAGGGGCAGGTGGTCCCTTTTATGGTGGGTTCCTGTGGTCGC450.11263798152737103No Hit
TGCACTGGGCTTCGTCTTAGCAGTTAGTGGATTACTGATTACTAAA450.11263798152737103No Hit
TTGCATGGGGGCCGTCGGGGCATCCTGCTTCTCTCAATGACTCTCA450.11263798152737103No Hit
CAATAAGGGGGGTTTTGGGAAGTGCACGGGGCGACGATGGCGGCGG440.11013491527120724No Hit
ATATGCGGGGCACAGCGGTGTCATCTGTCTAGGTAGCGGCTTCACC440.11013491527120724No Hit
AACTTAGGGGACTGTTTGCTGCTTTAGGTGTCTCTTTTCCTCCCTC440.11013491527120724No Hit
CTACTGAGGGGTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGA440.11013491527120724No Hit
ACGTGGGGGGGTGTCCCAGCTGCGGGCGGAGACTGCACCATGGCCC440.11013491527120724No Hit
TTGAGCCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTT440.11013491527120724No Hit
CTCCTCGGGCCTGAAGCGCAGATTTCCTGTGGAGTAAGGACACTGA440.11013491527120724No Hit
AGCACTGGGGACAGCCAGCTCCTGCGGATAGCTTCCTCCAGGTGCA440.11013491527120724No Hit
GAATAAGGGGAGTGACGCAGGGCCCTCACGTGACCCGGGGCTGCAG440.11013491527120724No Hit
GTAGTTGGGACTAACAGCTGGAGACTCTAGCTGGAGCAGTTGGCTC440.11013491527120724No Hit
GTTACAGGGGGGAATTCAGATGTATATATGATGTCCTTGGACGGGG430.10763184901504343No Hit
ACTAAAGGGACTTCTATGACATGGAAATTATTGAAGAGGAAGCTTT430.10763184901504343No Hit
CTAGCAGGGGGACCGATTCGGCTGCTGGGGCGCAGGCATGGCATAC430.10763184901504343No Hit
GCCTCCGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG430.10763184901504343No Hit
TAAAAAGGGGTCATGGCGTCGCTGAATTGTAGGACTGCGGTCTGTG430.10763184901504343No Hit
CTTACCGGGCAGAGGTTAGAATGCTGGGTGGTTAGAGCCTTGCTGC430.10763184901504343No Hit
TGCTCAGGGGGCGCCTTTCCTGGCTGTCGGAAGCTGCGGACTCGTC430.10763184901504343No Hit
CTTCATGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT430.10763184901504343No Hit
GTTTATGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC430.10763184901504343No Hit
TTTGAGGGGACTGACGGAAGTTAGAAGATGGCGGCGTCCGCAGTCT430.10763184901504343No Hit
TCTGCTGGGTTCCTGCCAGCATGTATGTGTACCAAGTGTGTGCCTA430.10763184901504343No Hit
GTTATAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG430.10763184901504343No Hit
CAAATTGGGGGGGGTCCCGGGACTAGAAGAAACGGCGGCCGGGAGG430.10763184901504343No Hit
TCGTCAGGGAGGAATAGGTACCAAGAAAAAAACGAACCTTTGGGTT430.10763184901504343No Hit
ATCACTGGGTCTACAGCAGGGGGACCGGAGCAGTATGGAAAACCTG420.10512878275887963No Hit
TCTTGAGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT420.10512878275887963No Hit
AAAGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT420.10512878275887963No Hit
AGCCTGGGGTAGTGTGCAGAATGCTGCGAGGTCATAGGTAAAGTGA420.10512878275887963No Hit
ATTAAAGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA420.10512878275887963No Hit
TAGCATGGGGTGGGTGGTGGATCAGGTGATCCGAGGGGCTTCGGAG420.10512878275887963No Hit
CTACTTGGAACCTATGTTTCCCCTTCCCATACGGAGCATCTTCAGA420.10512878275887963No Hit
ACTCTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT420.10512878275887963No Hit
TACTACGGGATACACAGGCCAGCAGGTGTGGGGAATGCAGCCCGCT420.10512878275887963No Hit
ACGCTCTGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAAC420.10512878275887963No Hit
TTATTAGGGCTCTTTCCGTTCCTAGCGCAGCCATGGCTCGTGGTCC420.10512878275887963No Hit
AACTCTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG410.10262571650271582No Hit
AACTATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.10262571650271582No Hit
AGCATTGGGGGCACAAAGCTTGTTCCGTTAGCTGGCATAAGATTCC410.10262571650271582No Hit
TTTGCCGGGGGGGAATTCGAGCTCTTTCGACGTTTTGAAGGAGGGT410.10262571650271582No Hit
CTACAAGGGACGCATATTTTGTGTTGTGTTGTGTTGTTCTAAGAAT410.10262571650271582No Hit
GGTGCTGGGATTAAAGACGTGCGCTACCACTGCCCAGCTGCTATGA410.10262571650271582No Hit
CTCGCAGGGGGAGCGCCTGCCTGTCTACAACAAGTCTGCCTGGCGC410.10262571650271582No Hit
TAATAGGGGCACTGATGGAATTCCGGATCTCAAGGATTCTAAGGAC410.10262571650271582No Hit
TGTCCAAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA410.10262571650271582No Hit
CAGACGGGGGCCTTCCAACTCTCCATCGCCATGGCCGCCGACATCA410.10262571650271582No Hit
GGACCTCGGTGACCAGGATGTTTCTAACTCCTTTACTCAGGTGCTA410.10262571650271582No Hit
ACTCATGGGCCTCGTGTTAGATATTGAGGCTGCTTCGTGTCGGCAC410.10262571650271582No Hit
TCTGTTGGGGCGCGCGCTCGTGCACCACGCGCCCCGTGCGGCCCGC410.10262571650271582No Hit
ATCTTTGGGAGACGCATGCGCTCTGAGTTCTGGTTCCCCAGCATGG410.10262571650271582No Hit
TATGCAGGGGGGGCGACCTCTTCCTGCGTTCTCACGGCTCTTTCTG410.10262571650271582No Hit
AAGAAAGGGAGAGCCAGAGTCTGCGATCCGCAGAGCAGCAGCCTGC400.10012265024655202No Hit
GTACTAGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT400.10012265024655202No Hit
TTATAGGGGAGAGTCTTGTTGGAGCTTTATCCCTTTGTCCTAGCCA400.10012265024655202No Hit
TATTGTGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT400.10012265024655202No Hit
AGCGGGGACTGTCGAGTCGCGTCCACCCGCGAGCACAGCTTCTTTG400.10012265024655202No Hit
CGCCTAGGGCCGCCAGAGCCTGGGGGACCTCTTCCTAGAAACATTT400.10012265024655202No Hit
CTTCCCGGGGCCATGGCCGACGTGGAGGACGGCGAGGAACCCTGCG400.10012265024655202No Hit
GATCGGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTTG400.10012265024655202No Hit
TGCTCCGGGAAGCCATGCGCATTGGAGCAGAGGTTTACCACAACCT400.10012265024655202No Hit
ATGTATGGGGTGTGGAGCAAAAATACATCTTTAGCCATGGATGTGT400.10012265024655202No Hit
TTACTAGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT400.10012265024655202No Hit
CTTCGCGGGGGTATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCA400.10012265024655202No Hit
ATACAAGGGGGAAGCCCGGATGGCAGAGGTGGCCCGGCTGCTGGGC400.10012265024655202No Hit
GTAGCGGGGGGTTCGGGTAAAAATGGCTGAATATTTAGCTTCGATA400.10012265024655202No Hit
GTAGCCGGGCTGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAA400.10012265024655202No Hit
CGCGATGGGACCGCTCCCAAGCGCGGCGGCGGCAGCGTAGTTCCTA400.10012265024655202No Hit
ACGACAGGGGTCTGAGAACGTTCAGGATTTGCTGCTCTTGGATGTC400.10012265024655202No Hit
AAAGGGGGCATGGGGAAGGGTGTCTCACAGGCTGTTGAGCACATCA400.10012265024655202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)