FastQCFastQC Report
Sat 31 Dec 2022
SRR5843317.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843317.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14072
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAACAGGGGGATCTAGGATGTAGGAAAGGGTTGGGTCTAAATTGT310.22029562251279136No Hit
ATAGACGGGGAAGGGATGGACCAAATCAATAAGGACATGAAAGAAG270.19187038089823763No Hit
CTTGTAGGGAGGCAGGAAAGATGGCTGTCCTTGCGCCTCTGATTGC270.19187038089823763No Hit
TACTAAGGGGGCAGCAGCCGCCGCAGCTTCTCTAAGCTGGTGCAAC260.1847640704945992No Hit
ACAAGTGGGGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTGCTG260.1847640704945992No Hit
TCTTAAGGGATGAGGAAGGACCTGGCTTCCATTTCCAGTGCTGGAA250.17765776009096076No Hit
ACTTCTGGGGGAAGACTGGGAGAGGAGACACTAAGTGCTGCTCAAG250.17765776009096076No Hit
GTCTTAGGGTATGAAGAAAGTTTAACATGTGCTACAAGTAGTAAAG250.17765776009096076No Hit
CTTCGCTGGGGGTAAAAGCTATGCTGGGGAGGCAGCGCGGAGCTTG240.17055144968732233No Hit
GCTTTGGGGGAAGACTGGGAGAGGAGACACTAAGTGCTGCTCAAGC240.17055144968732233No Hit
CTCAATGGGGCCAGACCTTGGTGCCATGTGATGAAGGACCGAAAGC240.17055144968732233No Hit
TTGAAGCCGGGAGGGAAACGGGAGCTCACACACATACGCGCATACA240.17055144968732233No Hit
CATCCAGGGGTTGCTGGCGGGAGAGACTGCAACGCCGATGTCTGAG240.17055144968732233No Hit
CATCCAGGGGGGAGATCGAGATCCTGCGGACGCTGTACCACGAACA230.1634451392836839No Hit
CTATCAGGGGGCAAGGTCAGGCTTAGCTCATTGACTACAGAAGACC230.1634451392836839No Hit
CACAATGGGGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTGCTG230.1634451392836839No Hit
AATGTAGGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTG230.1634451392836839No Hit
TTAACCAGGGGGCAGCCGCTCGGGCCGGTCGCCGCTGCAGAGAAGC220.1563388288800455No Hit
CGTCCAGGGGAGTCGCCTGAGGTCCCCGCCGACGACGCACTCACCA220.1563388288800455No Hit
CATAAAGGGAGGACCCTGCATGGCTGAGCCTGGAACTGTGATCTTC220.1563388288800455No Hit
TTCTGTGGGGCTCTCCATAGCCCGCCGTCTCCCACGGAGCTGCCCG220.1563388288800455No Hit
ACACTAGGGTGAGGGAAGAAGCCAGCTGCACCCAGTATCTCCATCC220.1563388288800455No Hit
TAAGATGGGAGAGGAGCTCAACCGCCGTTACCAGCCAGCGCTGCAG220.1563388288800455No Hit
CAAATTGGGGGACAGGGAAACGGGAGCTCACACACATACGCGCATA220.1563388288800455No Hit
CCTTAGGGGACTTCTACTGCTTTGCCTGCAGGTCTTTGGGCTTCAG210.14923251847640703No Hit
AACACTGGGGGGGCAAAGATGGCGGCGTCCAGGTAGAGGTTTTGTA210.14923251847640703No Hit
CATACTGGGGAGAAGGAGAGGGATTTCTACTTCGGGAAGTTGAGAG210.14923251847640703No Hit
CTCGTACGGGGGACAGCCACAGATGTCAGATGACCTGCATCCTATG210.14923251847640703No Hit
CTTCAAGGGATGGAGAAGAGATCTATTGCAAGTCATGTTACGGCAA210.14923251847640703No Hit
AATACAGGGGAAGTCAACAGGAATAGTCCTCATTCAGGTTCCTCAC210.14923251847640703No Hit
ACTGCTGGGTGCTGGAGAGTCTGGCAAAAGCACCATTGTGAAGCAG210.14923251847640703No Hit
GCTTTAGGGGCCTTTTTCATGGCATTCATATTCAACTGGCTTGGGT210.14923251847640703No Hit
CAAGCCCGGGGAGTGTTCCCAGGGTTGACACTAGCTTCGGCATCCC210.14923251847640703No Hit
ACCTGAGGGATTTTGGGAGGATTTTCTCAGGGAGGCGCCTTGTCTT210.14923251847640703No Hit
TTTACAGGGGGGATTTAAGAAGATCACTCTGAGTTCTTCCTCAGAA210.14923251847640703No Hit
TAGTTTGGGGATTTCTGCTTTGATATCATCTAAAGCAATGGTTCTC210.14923251847640703No Hit
CAGTGGGGGGACCGTGTGCAGCACCTAGAACTGGAACTGAACCTGT210.14923251847640703No Hit
GGTCAGGGGGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTGCTG210.14923251847640703No Hit
CACTCGGGGTGCGTCCCGAGCAGCGTTCTGGTTCTGAGCTGCGTCT200.14212620807276863No Hit
TCTAACGGGGCTGTTAGTAGAGGACAATGTCTATATAAAATATCAA200.14212620807276863No Hit
CTCTTCGGGGAGACAGGGAAACGGGAGCTCACACACATACGCGCAT200.14212620807276863No Hit
TCTCTTGGGGGGGAGAAGAAGCTGGAGGCATTTGCGGTGCCAGAAA200.14212620807276863No Hit
TTATCAGGGAGTTGTGGAGAGACTGTAGACGAGTTGGGTTCGTGTG200.14212620807276863No Hit
CTACTTGGGAACCCATTCCCTCGGATTCTGTCCTCAGTGGAGAGAG200.14212620807276863No Hit
CTACACGGGGTCTCTTCCCTCCTTTCCCTCAGAGGATGTCCGCCTT200.14212620807276863No Hit
ACGCCAGGGGGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTGCT200.14212620807276863No Hit
ATCTTGGGGGCGCCTGGCGTTGGGGAACGGAGCTGGGGGCTCCGGG200.14212620807276863No Hit
TAAGATGGGGAGATTATTGAAGTTTCCACAGACGGTCAGCTGTTGA200.14212620807276863No Hit
TCCTAAGGGGGCACTGAGCCGCTGCTGCTGTCGCGCAGTCCGCTCC200.14212620807276863No Hit
CTGATTGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAGT200.14212620807276863No Hit
CTACATGGGGAGAGCCGGTTCGGCGCGTCGACTGTCCAGAGTCCGC200.14212620807276863No Hit
CTCACCGGGGCGCGCGGCCTTGGATACCTGGCGGCCTCTGGCCTCA190.13501989766913017No Hit
TCCATTGGGGCCTGCAAGGTCCTCAGTGCGCTGCAGCCCGGAGCTG190.13501989766913017No Hit
TGCGCTGCGGGCCGCACCGCCGCCCTCTCGGAGGCGGGCCCGGCAG190.13501989766913017No Hit
AGACCTGGGGATTCGGCCAGAGCTGCCAGCGGGGTAGCCACCGCCG190.13501989766913017No Hit
CATTTCGGGACAATGCAAGGAGGCCAAATGCCATCAAGCTGGGCCT190.13501989766913017No Hit
TTGGATGGGGTTTCCAATACCTAGTGTTTTTAAATTAGCATTGTCG190.13501989766913017No Hit
TTGACTGGGGCTGCCTGTGGAAGACTGGGAGAGGAGACACTAAGTG190.13501989766913017No Hit
TTTAAGGGGAGACGAAAAACACTAGCCAAGGCGCCTGAGAGTCGCC190.13501989766913017No Hit
TACTCCGGGACTGTGGCTGGCTGCCCTTCGTGATGGCTGCCGTCAG190.13501989766913017No Hit
ACGTAGGGGGCAATTTGCAGAGGAACTTACAGGTCCTGGCCCAGTA190.13501989766913017No Hit
TGTTCCGGGCTCACATCTTGGGCCCCAAATGGACAGATCACTTCAA190.13501989766913017No Hit
ACAAACGGGGAGCAGAACGAGGTTCTGGTGACCCTAGCCGCGTTCG190.13501989766913017No Hit
CGAGGAGGGCCTAGACTAAAATATGACCTGAATATCTCTTTTGATG190.13501989766913017No Hit
CGTATCGGGGACCCAAACCATGACGGATCTGGAGAAGCCCAGTATC190.13501989766913017No Hit
GCTACTGGGAGCAGAAATCCTGTCATGGCGAGACTCGGGCTGCTTC190.13501989766913017No Hit
GCGCTGAGGGATCTGGCAAAGGGGGCGCTTGCGCGCTGCAGTGGTG180.12791358726549176No Hit
CTGCCTGGGAAGCCCCCGTTCCTGACTCAGCTCCATTCCTGCTTCC180.12791358726549176No Hit
CGGAAAGGGCCTATGTTCATTAATCGTTGATTATTCTCAACCAATC180.12791358726549176No Hit
TGGCCGGAAACCCGCGCCGCAGCCGCCTGGCCGGGAGCTGGCCCTC180.12791358726549176No Hit
GCTACAGGGGGAGCTTTTAATCAAATATGGTGCTGATGTACACACG180.12791358726549176No Hit
TATGTAGGGGGTGGAAGACTGGGAGAGGAGACACTAAGTGCTGCTC180.12791358726549176No Hit
AATGTAGGGGAGCTGATCCGGGGAGTCTAGTTGCGTGCGGGCAGAT180.12791358726549176No Hit
AAGCTTGGGGACAGTGGGGGAATGTCAGCAGTTTCAGATGGGAGTA180.12791358726549176No Hit
CAACTAAGGAAGACGGAGACCAGCCATCATCTCTCCCTCGACAGAA180.12791358726549176No Hit
AACCTAGGGCTTTTTCGCAACGGGTTTGCCGTCAGAACGCAGGTGT180.12791358726549176No Hit
CTTGTTGGGGTAAGAGAAGAACTGGAGGCTCTAAGCAGAGGATCCA170.12080727686185333No Hit
TGTCCAGGGGAGGGGCGGGGCGGCGGCGGCGGCGATTGTCTGGCGG170.12080727686185333No Hit
CGACGCGGGAAGGAAGGCTGCCCGCTAGACGTGACGGGGACAGGCG170.12080727686185333No Hit
AGTGCTGGGATTGAAGGCGTGTGCCACCACGCCCGGCTTCTGATGA170.12080727686185333No Hit
CTTTCAGGGGACTCCCGGCTGCTTGGACTCTGCTAGTCCTTCTGGG170.12080727686185333No Hit
ACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG170.12080727686185333No Hit
TAATAGGGGCAAGTACCAATCCAACTCTATTCAGATCCAGTGGTTT170.12080727686185333No Hit
TGTAGCGGGGGATCTGGAATAGGGGGAACATCTGCATCTGGATGAG170.12080727686185333No Hit
GTAACTGGGGGTGGTGAAGGTTTTGGAGAAATCAGACCAGACCAAT170.12080727686185333No Hit
CAACATGGGGAACGAGGGGGACGCAACGGAGGCAGGTTGGAGCCGC170.12080727686185333No Hit
GCTGCAGGGTTAACACTTGTCATCCTTTATTGCATTTCTTTCATTG170.12080727686185333No Hit
TACAATGGGGGATCGAGAGGATGGGCCCTGGCATTGACCGCATTAG170.12080727686185333No Hit
CGGCACGGGGAGTGCGCTCCGGGATTTCTTGACTTTATTTCGTCAA170.12080727686185333No Hit
ATTACAGGGGGGCGCTCCGCTGGTTGTGTGTACGGTGTGTCGCCGC170.12080727686185333No Hit
GCTCCCGGGGAGTTCAGCCTCGGTGTTGCAGCCCAGTCGGAGGCAG170.12080727686185333No Hit
ACACAGTGGGGCGCAGCTTCGAGGGCCGGGAGCTCCTGGTCATCGA170.12080727686185333No Hit
TATATGGGAGAGAAGGTTCTGCGCAGAGCTGGCACTCAGGGAGCAT170.12080727686185333No Hit
ACACGCGGGATTTTGGGTGGAAGCGATCACTGAGTGGCGGCGGCTG170.12080727686185333No Hit
CCTTGTGGGGGCTGCGGGATGGCGGCGGCGACACCGACAGAGACAC170.12080727686185333No Hit
CACTCAGGGACCCTTCCGGAAGTTTTTTTGTTGTTGTTGTTACCTG170.12080727686185333No Hit
GCTCAAGGGAATCTACACCCCATTCACAGAAGACACTGAGACTGTA170.12080727686185333No Hit
TCATTAGGGGGAACTCAAACTAAATAGGAATCTAGATGCAGGAAGT170.12080727686185333No Hit
CACCATGGGGGAGCCCGAGGCGACGCGAGCTGAGCAGGAGCCACCG170.12080727686185333No Hit
ATGTGAGGGAGATTATTGAAGTTTCCACAGACGGTCAGCTGTTGAG170.12080727686185333No Hit
CCACACGGGACTCGGAGAGCCGCAGCGGCAGCGGCGCGTCTCGCTT170.12080727686185333No Hit
CGCCCTTGGAGGACAAAGTGGTCGAGTTGGACAACATTCCGGTTCG170.12080727686185333No Hit
TCTTCATGGGCACTTGGTGAACAGTGAGTCCAAAGCAAACATCACC170.12080727686185333No Hit
CGTGACGGGGGTATGTAGGCATCTCTCATTCAGAATGGACATTGAC170.12080727686185333No Hit
GCTCCTGGGGGTGTTGATCAACAAATCAGGGAATCGTTCAGAAAAA170.12080727686185333No Hit
TCACCCTTTGCTGCTTCCACGCAGTATGAAAACCCCATAGTTGTAG160.11370096645821488No Hit
GCCTCGGGGAGTTTTCATCGCCGGCGTTCCTGGTTTGCTAAGTGCT160.11370096645821488No Hit
GGTAGAGGGTTACATGACTTTGGTTACAGAGGAGTCTCTTCGCAAG160.11370096645821488No Hit
TGCCCAGGGTAAGGGTTTCAAGGATTGGGAACGGAAGTTGTTTTGT160.11370096645821488No Hit
TCGAATGGGGGAGCTGCTCTAACTAGAGCAAAGAGACAGGACGAAG160.11370096645821488No Hit
AGAATAGGGAGGGATTGGTGGAGGAGAACGTGTTCACATCCGACGT160.11370096645821488No Hit
CCAGCCCTACAAGAATTATACTCTGTTTACAACCATGTGAGATATA160.11370096645821488No Hit
TCTGTTGGGACAAGAGTCACAACAGGAAATCAGCTCAATGCAAATG160.11370096645821488No Hit
CCATCTGGGCGGCCGGCTCGCAGCACTCGCGTGGTGCCGTAGTGTG160.11370096645821488No Hit
TCTCACGGGGCCTCTCCGTCTTCTTCTGTCCACTCTGAGGCCTCCT160.11370096645821488No Hit
ACACCCCAGGAGTAGAAGCTGGGTAAGGCCCCATCATCCTGACCAT160.11370096645821488No Hit
GGTACTGGGGGGTTGTGCGATCAGATCGATCTAAGATGGCGACTGT160.11370096645821488No Hit
AGCACAGGGAATTCTAACAATTTTCAAAGGATTTTCAAATGTGAAT160.11370096645821488No Hit
TGCCTAGGGACTGTCTGCAGGATTTCTGACACATTATATGCAGTTT160.11370096645821488No Hit
GTCTGGCAGGTCAGTTCATTCGCTCCTGACTATGCGAAAGCCACAG160.11370096645821488No Hit
GTAACCCGGGGGTCTCATTGAACGCGGAGGCAGCTGCCGGGCATTC160.11370096645821488No Hit
GGCAATGGGAGTGCAGTCTGGAGACTCTGACAAAGGAGCAGGGAGC160.11370096645821488No Hit
TACAACAGGGGGGAAGCAAGGCCGGAGCTTTGACCATAAAGCCCAA160.11370096645821488No Hit
GTACGTGGGGCTTGTAAAGACAGCCACTAAGAAGCTGAGGATTCCA160.11370096645821488No Hit
TGTCCAGGGGAGGGCTGCCCTTTGTTAACCAGGGAGGGCGCGGCCG160.11370096645821488No Hit
TCCCCAGGGGATCTGCGAACGGGCTGCCGGCCAGGCTGGCTTGCTT160.11370096645821488No Hit
ACACGCGGGATTGCGTTACTTACCTCGACTCTTAGTTGTCGGGAAC160.11370096645821488No Hit
TTGCCTGGGGCAGTGGATCGCGAGGCTGTTCCCATTGGAGTTGCTG160.11370096645821488No Hit
ATATCCCTAGTTACCTGGACAAAGACGAGCAGTGTGTCGTGTGTGG160.11370096645821488No Hit
CGTCAGGGGGTGCGTGCCCACTTCCAAGATGGCGGCGACAGCAGCC160.11370096645821488No Hit
TATTACGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCT160.11370096645821488No Hit
CTGACAGGGGGTCCTCCGTCGGTTCTCTCCATAGCCCGCCGTCTCC150.10659465605457646No Hit
TGTTGCGGGAGACTTTACTGATGTCGTGGCGCTCTGAGGCAAAAAG150.10659465605457646No Hit
ACGTCCGGGGAGTTCAGCAAACAGTGGAGAGAACAGCAGACCAGGA150.10659465605457646No Hit
CTTAGTGGGATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCT150.10659465605457646No Hit
ATTGCAGGGTCTGAATTCTAGACAAATGAAAATAGGTCAAGCTCAC150.10659465605457646No Hit
ACTAAAGGGCAAGAGCTGGAGACCATCACCATCCCAGACGTGTACG150.10659465605457646No Hit
CATGTAGGGGGATGTGAGCGCGCGCGGGGTCTGCCTGCGGCTCTCC150.10659465605457646No Hit
GTTGCAGGGACGCTCTTCCGATTTTGCGAGGGGGGAGGCTCCTCAG150.10659465605457646No Hit
TAACGTGGGGGGATATCCCTGTGGATTTTAAGTACATAGCAGAGCC150.10659465605457646No Hit
ATACTTGGGGGAATATGGCAGGGCTGAGCAGCTCACAGATCCCCGA150.10659465605457646No Hit
GAACCTGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGC150.10659465605457646No Hit
CAACTAGGGGAATGGAAGGGCTGGAGCAAGCCTAGTGACTCACCGG150.10659465605457646No Hit
TACGACGGGGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCC150.10659465605457646No Hit
GCTTCTGGGCTTTTCCTGTGGGAGCAGCCGGGTAGAGAGGAGCGTG150.10659465605457646No Hit
TACAGTGGGGCACAGCAGCGACTCGTCTTCACTTGACTGACGTCCG150.10659465605457646No Hit
TACAACGGGAGTTGGTGTAGTTAAAACCTCCTCTTCTGCTCCAGGA150.10659465605457646No Hit
TATCACGGGGAGCGCAGAGCGGTTTGGTCGTTCGTTGGTGGAGTAT150.10659465605457646No Hit
ACTGTTGGGGCCGGAGTCAGATCGTCTGGCTCGGGACCCCCGCGCG150.10659465605457646No Hit
GTTTGTGGGGTATCCCTGCCGTCTGCAAGAGTCCAGAGGCTGGACT150.10659465605457646No Hit
CAGACAGGGGGTCCGAGCGAGCGCGTCCTTGCTTCAAAGAGATAGT150.10659465605457646No Hit
TACTCAGGGGAGTCTTGGGCGGGTTAAGGTGCCGGGCGGCTGCAGC150.10659465605457646No Hit
ACTGCTGTTCTCCACCCCCAGACTACAACTCCGTGGTGTTGTACTC150.10659465605457646No Hit
GTGCATTGGGCATGGGTGGAGCACTGTAAAAAATGGCGAAAGGTAG150.10659465605457646No Hit
TTTCTTGGGGGAGCACGCCGTGGACTACGTGGAGAGGGCCGTGTCA150.10659465605457646No Hit
GCAGCAGGGCAGATAAGCCCACCAGAGACATGGAATACCAGTGCAG150.10659465605457646No Hit
AACCCTGGGGCCCACCCCGCAGTGTCCCTCGGGGCCGCCGCGGGGC150.10659465605457646No Hit
AAGCCTGGGGAGATTCGGATCTATACAGATGCAGGCCGTATTTGTA150.10659465605457646No Hit
TTTCTAGGGGAGGCGACATGGCGGCGGCGCTGCTGCTGGCGCTGGC150.10659465605457646No Hit
TGACCCGCAACCAGCAGCTCCCCCAGCTGGCCACACAAGTGCACCT150.10659465605457646No Hit
TGCTTATGGGCTGGCCATGAAGGTGTCCTCACCCCCTCCAACCATC150.10659465605457646No Hit
TAAGCAGGGAGCGCAACGAGGAGAAGGCGCAGCGCGAGGCCAACAA150.10659465605457646No Hit
CGCCCAGGGTGAAGGCAACTCAGTATCATTGGATTTTCAGAACTCA150.10659465605457646No Hit
ATTCTCGGGGCCCCAACCCAGCTGAATAGGCTGCGTTCTCTTGGAA150.10659465605457646No Hit
GTTAAAGGGAGGGGACACGTGGTGCGGAACCGGCGCGAGTTTCCCC150.10659465605457646No Hit
GACACAGGGAGCCCCCCGCCGGGCGGACCACTTCACCCTCTCTACG150.10659465605457646No Hit
ACACTAGGGCTGCTGCTGGGTGCTGGAGAGTCTGGCAAAAGCACCA150.10659465605457646No Hit
CGCTTAGGGGCGGGAGCCGCCAGGATTTGCGGGGGGCCTCCGGTGC150.10659465605457646No Hit
CATGCAGGGGAAGAAAAGCAGGGCAGATATCAGGGCAGCCTGGCTT150.10659465605457646No Hit
ACTCCTGTGCTCTACAACGACACCGCTGTGCTGGAGAGCCACCACG150.10659465605457646No Hit
CTCCTGGGCCTGTCACCCTGCAGTGTAACCTCACTTCCAGCTCTCA150.10659465605457646No Hit
TATGTTGGGGGGATACAAGCAATGGTTGAGTTTGAGTCAGTCCTTT150.10659465605457646No Hit
TGTGTTGGGCGGCTTTGCGGAGTCGGCGGTGCTGCAGCACGCGGTG150.10659465605457646No Hit
AACCAGGGGGAGTGCGGCGCTGTTTAAAGATGGCGGCGGAGGAACC150.10659465605457646No Hit
ACCTCTGGGGATGAAGATGGTTACTACAAACCAACACAATGCCATG150.10659465605457646No Hit
TTCGCAGGGGAGAGCACATCCGGTTTTAGCAGAGCAGGGAAGCTCC150.10659465605457646No Hit
TTCATAGGGCAAGGAGTTGCTGGCCCAGAAGCTGCCTCTGTGGCAG150.10659465605457646No Hit
GGCATGGGGACGCTCTTCCGATCTTTTACTGGGGAGTGCCGGAGGA150.10659465605457646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)