FastQCFastQC Report
Sat 31 Dec 2022
SRR5843155.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843155.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71480
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1090.15249020705092334No Hit
CTCGCTGGGGGGTGAAGATGGCTGCCGCCCGGGCTGCGGCCCTGGG1080.1510912143256855No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG1080.1510912143256855No Hit
CTCTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT890.12451035254616677No Hit
GCATATGGGAGGGGCAGCGGGTGACGGTACGATGGCTGCGCAGCGG800.11191941801902631No Hit
GCACCAGGGGGGCCTGACTCAGTGTGTAAAAAAAATTCTTGCCTTG800.11191941801902631No Hit
TGCTCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT790.11052042529378847No Hit
CATTCGGGGGAGAAGGAACGGGAGCTCCATGAGAAGTTTGAGCACC790.11052042529378847No Hit
ACAGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC780.10912143256855064No Hit
CGGCCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT770.10772243984331281No Hit
CCCAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC750.10492445439283715No Hit
TAGGCCGGGGATCTGCTGGGTCACCAAGGGCCCACGCTGGGGCCCA750.10492445439283715No Hit
AGTTCGGGGGACAGGTGTTTGGGAAGCGCTCTGCCCGGCGGACAGG750.10492445439283715No Hit
ATAACAGGGGCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGATG740.10352546166759932No Hit
CTACCCGGGATTGTCACTGAGAGCCCCAGGAGAGTGAGAAGCAGCG730.1021264689423615No Hit
GCTTACGGGGAGGCTGGGGCCGGAGGAGCGCACTGATTCTCGGAGT730.1021264689423615No Hit
CAAACTGGGGCACATCGAGACTGTGGCCATGGAGGGAAACAGTGGC720.10072747621712368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)