FastQCFastQC Report
Sat 31 Dec 2022
SRR5843128.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843128.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45584
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTTGGGTGGGTCCTGTATCCCAATTCTCAGAGGTCCCGCCGTA580.12723762723762724No Hit
CCATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.12723762723762724No Hit
TGAGTGGGGGTGATGAAAGATATCAGTATCTATACTTAGAACCCCA560.12285012285012285No Hit
AGTTATGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG550.12065637065637065No Hit
TACCATGGGGAAGTTCAAGGCTGGCTCTCGCTTTAGTGGGCGAGTT540.11846261846261846No Hit
AGTAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.11626886626886626No Hit
TATCTAGGGATCCTGAAGGAGGAAAGATGACTCAGTACTTGGAGAA520.11407511407511407No Hit
GTTGTTGGGATCTCGCGCCTGGAGGAGAAAGTCAAGACCCTCAAAA520.11407511407511407No Hit
CAGTGAGGGGAGGCGACGGCGTGAGAGGCAGCGGCGGGATGGCCGG520.11407511407511407No Hit
TCGCATGGGGCGTGCAGGAGAAACCATGGAGCCTGCACTGCGTGCC520.11407511407511407No Hit
TACATATGGGATTTAAAATGGATGAAGGAAACAAATGCATTCATTA500.10968760968760968No Hit
GTACATGGGGCATTCCAGAGGATCCAGCATCCTCTTCTAGACTCCT500.10968760968760968No Hit
TGCAGTGGGGATGAGCTATAGTGCCAAATTTGCCTCCTGTTTCTAC500.10968760968760968No Hit
GTTTAAGGGGGGTTCCTGGCCAGCTTCCTCTGCCTAGCGAGCTTGT490.1074938574938575No Hit
GTACCGGGAAGTCTCGTCCTGACCTACTTGTCGTTTTTCTGTAAAG490.1074938574938575No Hit
CTATCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.1074938574938575No Hit
CACAAAGGGATTTCTAAGCTGCATCTCAGTGCCTGGGAGAGCCCTC490.1074938574938575No Hit
TTTCGCGGGTAATTCAACAGTGGGAGTGTCTATAATTCCAGCATGC490.1074938574938575No Hit
GGACGAGGGGAGTTTGGGCTGCGCAGCAATGGAGTCATGGTGGGAG490.1074938574938575No Hit
TGATATGGGCGATCTTCTTAGGGGATGGCCTACCCATTCCAACTTG490.1074938574938575No Hit
GTAGGAGGGGTGATCCTGCATGCTTCAGTTTAGGGGAAGTATGGGA490.1074938574938575No Hit
ACTGGGGGAAGATAGGGTCCACCCTTGACTCTGATCCTGCAGCCTC490.1074938574938575No Hit
TTAGCAGGGGAATGGCAAATGGCTGCATTCTGCTCTGGCCATACCT490.1074938574938575No Hit
GTCTAGGGGGAACTCTGGGGTGATGTGGGTTCCTCAGAGATCTGGG490.1074938574938575No Hit
TATCATGGGATCCACACATCTAGGAGATCAGTGCGAAATGGACAGC490.1074938574938575No Hit
CGGGTTGGGGGGTGAGTAGATACGTAGCACACTACCTCAAACCGCG490.1074938574938575No Hit
TACAGAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA480.1053001053001053No Hit
CACACTGGGACAGCCTCCTCTTGCAGATGTTTGTGGAGGAAAGAGG480.1053001053001053No Hit
TCTTTCGGGGGAGAGGAGGAGGTGGAGACCTTTGCCTTTCAGGCAG480.1053001053001053No Hit
ATCCTTGGGAGGCATTGGCATGACCAAGGCTGACCTCATTAATAAC480.1053001053001053No Hit
CCGTTTGGGGCGCAGCCCCGGGTTCGTCCCCTATAAGGGCCTAGTA470.1031063531063531No Hit
AACTCGGGACATAGTCACTTTATAAACACACTCTTTGTTGTAGTTG470.1031063531063531No Hit
GCCTGCTGTCAGGGCTCGGGCTAATTTGGGCCTGAAGGAACAGTAG470.1031063531063531No Hit
TGTAGCGGGACAGACATGCACTATCACATCTGGTAACCCTGACATT470.1031063531063531No Hit
GACCTCGGGACCAGCAATTACCTGCCCATTCCAACCCCTGACGGGA470.1031063531063531No Hit
TTATCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA470.1031063531063531No Hit
GTCCAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.1031063531063531No Hit
GTCGCAGGGGCCTGTGGCACTGCTTCGAAGACGCATGTCAGTGTGG470.1031063531063531No Hit
AGCATAGGGGTGGGTTACCAGTATGGGAAGGCTGTCTTTGGAGGCT470.1031063531063531No Hit
GATTATGGGATTTTCACCAGCGAAAGAAAAATGTCAGAAAATCAAA460.10091260091260092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)