FastQCFastQC Report
Sat 31 Dec 2022
SRR5843012.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843012.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61979
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACTTGGGCGATCTGCTGTCGGGGATAAAATCTAGTAAGAAACTG1160.18716016715339068No Hit
ACGCCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA1010.16295842140079705No Hit
TTTAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA960.15489117281659917No Hit
ATTAAGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG910.1468239242324013No Hit
GAGATAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT830.1339163264976847No Hit
AGTATAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT790.1274625276303264No Hit
GCTACTGGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCA760.12262217847980768No Hit
GTAACTGGGGGGAATTCTCAGATTACTTCCATTTCCGCCCAAGCTG730.11778182932928895No Hit
CAGGACGGGAACTATGCCCGTGGCCACTACACCATTGGCAAGGAGA730.11778182932928895No Hit
TACCATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA720.11616837961244937No Hit
GGTTGCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT700.11294148017877022No Hit
ATCATGGGGTCCAGCAGGCAGCTCCTCACTGGGCACTGGAGAGCTG700.11294148017877022No Hit
TGGATAGGGGCGGCGGGGCGCAACGGTGTCTCCTTCACTTCGCCCT680.10971458074509108No Hit
CATCATGGGGAGCAGCAGCCTGATGCATTCTGAATCGGAGCTGGAC680.10971458074509108No Hit
TTGCTTGGGGTGTTCTTTATTAATATCCTAACACTCCTCGTCCCCA680.10971458074509108No Hit
CTTGCAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT680.10971458074509108No Hit
AGCTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC680.10971458074509108No Hit
TACGTTGGGAGACCCCTCAGCTGGTGTTTCTGGAAGGGGAAACCAT670.1081011310282515No Hit
TTCTTAGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG670.1081011310282515No Hit
ACGCTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC660.10648768131141192No Hit
TCATTGGGGGGGCAGTGCCTCTTATCCAGGGTGAGTATATGATTCC660.10648768131141192No Hit
TTAAAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC650.10487423159457236No Hit
TCTAGCGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG640.10326078187773279No Hit
AACGCTGGGAAGGTTCGAGGACTTATTGAGATCATTTCCAATGCAG640.10326078187773279No Hit
CCGGCGGGGCAGCTTTATTGCTCTCTTCCCCCAAAGAATGTCGTTT630.10164733216089321No Hit
CAATTTGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA630.10164733216089321No Hit
GTTTTAGGGGAGTGCAACTTCTGGAGGAAACAGCTGGTAAGAGGTT630.10164733216089321No Hit
AAGTATGGGGGGACGAAGACTGTAGAGACTACCCAGAGTCTGACCT620.10003388244405363No Hit
CTAGACGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG620.10003388244405363No Hit
CGACCTGGGCATTGAGATTCCTGCAGAGAAGGTCTTCCTGGCTCAG620.10003388244405363No Hit
TTTACTGGGTCGGCTATATAGGAATAGTATGAGCAATAATGTCTAT620.10003388244405363No Hit
CAAAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC620.10003388244405363No Hit
GCCTATGGGGGAGTCTGAGTTCTCCCAGGAGCAGAGTGAGCAGGCC620.10003388244405363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)