FastQCFastQC Report
Sat 31 Dec 2022
SRR5843003.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843003.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39056
Sequences flagged as poor quality0
Sequence length46
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCATGGGGATCATATTTTGCCGACAAAATATGGATTGAAAGATG690.17666939778779187No Hit
CTCCTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT570.14594428512904548No Hit
GCCACCGGGGGGATGTTGGAGGCCAGGATAAGATTCGGCCTCTGTG570.14594428512904548No Hit
ATTGCAGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCT560.14338385907414994No Hit
ACGCTGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA540.1382630069643589No Hit
TGTGGTGGGGTGAATGGGCAGAACGTGGAGGGGCTGCGACATGCCG510.13058172879967228No Hit
CAATGCGGGCCTGCCCACAGACCCAGCCGGCTCGCCGGCCCGGACT500.12802130274477672No Hit
AGCTTTGGGACTGCCTGCGATCCTTTATCCGCCTGCTCCTGAACTA490.1254608766898812No Hit
TGTGCAGGGACAGCAGTCCATGCTGTCTTAGCAGTCAGCCACCGTC490.1254608766898812No Hit
GCGCAAGGGCAGTTGGTGTAGTTAAAACCTCCTCTTCTGCTCCAGG480.12290045063498567No Hit
GCTTGTGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC470.12034002458009012No Hit
ATAAAAGGGGCCTCGGGAATGGAAAGGGAGAATTCAAGTGTGATCC460.1177795985251946No Hit
GATATGGGGCACTTAGCAGGGTTCGCTTGGTCTCCAAGTCGAAGGG460.1177795985251946No Hit
AACCCCGGGGGGGAAATCAGTAAAGGCATTTTAGCATGTACTAATC460.1177795985251946No Hit
CTGTGCGGGATCTGTGTAGGGGTGGCTGTTTTTGTACAAGGTCCTG450.11521917247029906No Hit
TCGATAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT450.11521917247029906No Hit
ACTCTCGGGATATTTAAAAATCTGCCTTTGGGGGTATTTATTACAT450.11521917247029906No Hit
GATTAGGGGACAGCCGCCCGGGAAAAGATGGCCGCGCCTGCAGCGT450.11521917247029906No Hit
CGCGCTGGGGAAGAAAGAAACCGGAAGCATAGAAGGCGATAGTGTA450.11521917247029906No Hit
AGGGGAGCGGCGCGCGGCTGCAAGATGGCGGTGCAGATTTCCAAGA440.11265874641540352No Hit
GAACTTGGGGTCCGCTTCCGGTTTCTGGGCTCTGCTGGCTGCCTTC440.11265874641540352No Hit
AGCGCTGGGTCGGGACAAGAAGAGAACCTTCCCCTTGTGCTTTGAT440.11265874641540352No Hit
ATTTAAGGGGCCGGCCGCCGGCTTGGAAAAAGAGTTATGGCTAAAC440.11265874641540352No Hit
TGCTGCGGGGTGTGAGCTGGACGAGAGCAACACCCCCATGTGTGTG440.11265874641540352No Hit
CTAAACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA440.11265874641540352No Hit
AACCTTGGGCCTTTTTTTCCCTCAGCGCTGGCCGCGGCCTCCCGGC430.11009832036050798No Hit
TAGCTGGGGCACTTTGAGCAGATGAAGGATGACGCCATTGTCTGTA430.11009832036050798No Hit
CTATGGGGGATCTGACGGCGGGGGGCGCTACTTCGGAGGAGCCCGA430.11009832036050798No Hit
TTACACGGGATCCATGGGGAGCCCACCACATATTCACAGTAGGATT430.11009832036050798No Hit
CGCAAAGGGCTAAAGGCATATTTGGTTTACAACTCTCTAAGGCAGA430.11009832036050798No Hit
CGTCCCGGAGGAGCCGCGAATCGAAATGCTTCACGGAACCACCACC430.11009832036050798No Hit
ACTTTAGGGACAAAGCATGCGCGCTTGTCCACGTCTGGAGTCGTCA430.11009832036050798No Hit
CTGTAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC430.11009832036050798No Hit
CGATAAGGGGTGGAAGGGCCACCCAGGATCAAGGTCGGAAAGAAAT420.10753789430561246No Hit
AATCGCGGGGCTCTGGGAAGGAGAAGGGCGTGTTTCCGCTTGCTCC420.10753789430561246No Hit
ACTGCAGGGAATATCTGGGAATTAGGTTTGACTAATAGTGAAGGAA420.10753789430561246No Hit
CCACCCCCTAATCAGATAGTAGATGATTGGCTAAACCTGTTAAAAA420.10753789430561246No Hit
TTTGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT420.10753789430561246No Hit
ACGCAGGGGACTCGTGCAGAAGGAAACCCTGCCACCAGCCTCGGGA420.10753789430561246No Hit
TTGACTGGGAGGCGGAAGGAGCCTATCATCGCCCGCTGGCGACGTC410.10497746825071691No Hit
ACTGCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAATG410.10497746825071691No Hit
ATGGCTGGGGAGTCTACAGGCCCAGAGCAAGTGAACACAGAGGAGG410.10497746825071691No Hit
TAGATAGGGGCAAAAAACAGGCGCGCAAGGTCCGGAGGCTGGAGCC410.10497746825071691No Hit
TCTATTGGGCTGATTCTTTGGGCACCCAGAAGTTTATATTCTTATC410.10497746825071691No Hit
CTTCTTGGGCATGGTCATTCGGGAGGACAACCAGACTAACCGCCTG410.10497746825071691No Hit
GCCAATGGGGAGGCAAGCCGGGCGGGTGACGGGAAGTGCGGGCCGC400.10241704219582139No Hit
AGCAAAGGGGTACGTATAATTTTTGGGTGGGTATGGGAAATTGCTT400.10241704219582139No Hit
CCTTATGGGGAGGGGAACGTGGCTTTCCCCGCAGTGCCTCTTCTCC400.10241704219582139No Hit
ATCGGAGGGGTAATATGTTTTGATTCAAACATATATGCTTTTAAAA400.10241704219582139No Hit
TATTGCGGGAGTGCTAAGCACCGTGCCTGGTGTTCGACTCCAGCTG400.10241704219582139No Hit
CTATTAGGGGAACCATACCTAAACACTTTATCTCCAAGTTTAAAAA400.10241704219582139No Hit
TACTTAGGGGACTCGTGCAGAAGGAAACCCTGCCACCAGCCTCGGG400.10241704219582139No Hit
TCACTTGGGATTTCTTTCATCTTTGTTTACACTCTCACTAGGACTC400.10241704219582139No Hit
TCGCGGGGGGGGAGCATCGCGTACCCCGCCATGTTCTCCTTGGCGC400.10241704219582139No Hit
CAAAGCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT400.10241704219582139No Hit
ATTCATGGGGAAGTGTCTGCATAACTGCTTAGAAATGGGTTGCTTT400.10241704219582139No Hit
TCCTAAGGGGTGTTCCGACTTTCCGGGTAAAGATGGCAGAGCGCGG400.10241704219582139No Hit
CATGTCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA400.10241704219582139No Hit
TACAAAGGGGGAGCTGAAGAAAGGGAACAGAGGAAAGCCTGCAGGA400.10241704219582139No Hit
CGCTGCGGGGACCAGTAAGGTTGAGTTGACATTTTCTTTTAGACTT400.10241704219582139No Hit
TGAAAAGGGAGGAGCCAAAATGGCGGCGACGGTCGGGGTCTCCTTG400.10241704219582139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)