FastQCFastQC Report
Tue 24 May 2016
ERR841250.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841250.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2980703
Sequences flagged as poor quality0
Sequence length24-50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC882942.9621871082090365No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA710732.3844374967918642No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT629592.112219835387826No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC157150.5272246178166694No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA124930.4191293127829241No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAG116090.3894718796203446No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA113250.3799439259798779No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC77610.26037481761852826No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC71640.24034598549402605No Hit
CGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAG56360.1890829109777123No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG56350.18904936184517546No Hit
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA54430.18260792839809936No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGG52260.17532776663760194No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGT47860.16056614832138594No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG45530.15274920044029883No Hit
CTCTTCCGGGGACGTTGTCTGCAGGCACTCAGAATGGTCCAGCGTTTGA39060.1310429116889539No Hit
TCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA35610.11946846096373909No Hit
CTCTTTCCCTAAGCAGCCTGAGGTGATCTGTGAAAATGGTTCGCTATTC35060.1176232586742121No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCGGGCTCGGA34000.1140670506253055No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA33650.1128928309865156No Hit
ACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAAT33270.11161796395011511No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCTCGGA32270.10826305069642968No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCC31780.1066191432021238No Hit
CAGAGTGTTGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAA30690.10296228775560665No Hit
AGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGG30560.10252614903262754No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGTTC100.008717918135.3174344
GTCAATC1350.0130.3056844
ATTCACG900.0127.79980544
CTATCAT73100.0121.71165544
ACTACCC1400.0120.81914544
TAAGCCA14700.0115.9863844
ACCCGAT1150.0111.78396644
CGTTCGG205.088909E-4101.48807544
AATCGCA9100.095.16830444
CCGGCAT503.3833203E-1094.72220644
TATGGGA1350.090.21162444
TAGAGTC1550.087.3015744
GGTAAAG1950.086.7419444
CGACGGG7850.084.4656644
ACTTCTA17850.082.6308244
AATCACG1150.082.36713444
CCCATAC17600.079.960344
TCCGTAA1950.079.8025944
TTAGTAG1650.077.91003444
CAACGAA2750.076.2698344