FastQCFastQC Report
Tue 24 May 2016
ERR841245.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841245.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2067525
Sequences flagged as poor quality0
Sequence length24-50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT491562.377528687682132No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA427252.066480453682543No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC422732.0446185656763523No Hit
AAGCAGTGGTATCAACGCAGAGTGCAG280991.3590645820485847No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAG153760.7436911282813993No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGT145770.7050458881996591No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGG142320.6883592701418363No Hit
AAGCAGTGGTATCAACGCAGAGTG142060.6871017279113916No Hit
AAGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG130140.6294482533463924Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTG119090.5760027085524964No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGA113430.5486269815358944No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGAAGCA96110.4648553221847378No Hit
AAGCAGTGGTATCAACGCAGAGTGC75570.3655094859796133No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGG73530.3556426161715094No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC71850.34751695868248267No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGAAGCACTG65290.3157882008681878No Hit
AAGCAGTGGTATCAACGCAGAGTGCA63600.3076141763702978No Hit
AAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCT52500.25392679653208544Illumina Single End Adapter 2 (100% over 32bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGAAGCACTGCA45040.2178450079200977No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGC43890.21228280190082344No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCC42220.20420551142065996No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGG40810.19738576317094111No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC39700.19201702518711988No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA37990.18374626667150337No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA35960.17392776387226272No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCGTATGCCGTC32340.15641890666376465Illumina Single End Adapter 2 (100% over 25bp)
AAGCAGTGGTATCAACGCAGATCGGAAG31590.15279138099902057No Hit
AAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGC30220.14616510078475473Illumina Single End Adapter 2 (96% over 31bp)
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCTCGGA28360.1371688371361894No Hit
AGTGCGTTACTTACCTCGACTCTTAGCTTGTCGGGGACGGTAACCGGGA26940.1303007218776073No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCGGGCTCGGA26550.12841440853194036No Hit
AAGCAGTGGTATCAACGCAGAGTAGATCGGAAGAGCTCGTATGCCGTCTT25600.1238195426899312Illumina Single End Adapter 2 (100% over 27bp)
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG25410.12290056952152936No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGAAAGCACTGCA23760.11492001305909239No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCC23720.11472654502363937No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGGG23280.11259839663365619No Hit
CTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGC22950.1110022853411688No Hit
AAGCAGTGGTATCAACGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGA22210.10742312668528796Illumina Single End Adapter 2 (97% over 34bp)
AAGCAGTGGTATCAAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAA21490.10394070204713364Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGTGCAGGATCGGAAGAGCTCGTATGCCGT20720.10021644236466307Illumina Single End Adapter 2 (95% over 24bp)

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGC750.0136.5597744
GTACACC450.0136.5597744
CATGACG1350.0136.5597744
GTTAATT750.0136.5597744
AATAAGG500.0136.5597744
CGAAGGT255.306356E-8136.5597744
GATCCTA950.0129.3724244
CTATCAT56700.0127.7688844
TTACTTG750.0127.4557944
ACGTGTG650.0126.0551644
GACCCTT900.0121.3864744
CGTATTG1100.0117.9379844
AATACGA352.8849172E-9117.0512344
GGATAGA1000.0116.07580644
TGTGGAC1900.0107.8103544
CTTAACC3650.097.2754644
AATAGGC950.093.4356344
ACCACTC3150.091.0398544
ACGAACA1900.089.8419644
TATAGAC700.087.7884244