Basic Statistics
Measure | Value |
---|---|
Filename | ERR841241.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3883006 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 106553 | 2.744085381274198 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA | 78837 | 2.0303084775042843 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 71701 | 1.8465333301055935 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 25761 | 0.6634293122390231 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC | 19115 | 0.49227325427774254 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAG | 17595 | 0.4531283237780214 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA | 7365 | 0.18967264021739857 | No Hit |
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC | 7049 | 0.18153461519245656 | No Hit |
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC | 6038 | 0.15549808576139207 | No Hit |
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA | 5289 | 0.1362089061927795 | No Hit |
ATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCAC | 5030 | 0.12953881606157705 | No Hit |
CTATGTGGCTGATTGAAGAGTATGCAATGAGCGATTTTAGGTCTGTTTGT | 4816 | 0.12402762189911631 | No Hit |
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCGGGCTCGG | 4698 | 0.12098873913663796 | No Hit |
CTCTTTCCGGTGTGGAGTCTGGAGACGACGTGCAGAAATGGCACCTCGA | 4591 | 0.1182331420554076 | No Hit |
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG | 4496 | 0.11578658389917501 | No Hit |
CCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG | 4470 | 0.11511699956167978 | No Hit |
CTTTTTGTCCGACATCTTGACGAGGCTGCGGTGTCTGCTGCTATTCTCC | 4409 | 0.11354605169294099 | No Hit |
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA | 4316 | 0.11115100002420805 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACGTAT | 60 | 0.0 | 116.16144 | 44 |
CTATCAT | 8810 | 0.0 | 115.35834 | 44 |
CAGGACG | 65 | 0.0 | 97.47813 | 44 |
AATCGCA | 680 | 0.0 | 95.04116 | 44 |
ACTTCTA | 1130 | 0.0 | 91.95724 | 44 |
TAAGCCA | 4220 | 0.0 | 90.08641 | 44 |
ACGAACA | 235 | 0.0 | 83.582306 | 44 |
TATCGAC | 130 | 0.0 | 82.85641 | 44 |
CAATCGA | 145 | 0.0 | 78.654755 | 44 |
GGATACC | 90 | 0.0 | 77.44095 | 44 |
ACCACTC | 325 | 0.0 | 76.03293 | 44 |
CTATTAC | 145 | 0.0 | 74.28505 | 44 |
GATCTAG | 95 | 0.0 | 73.36511 | 44 |
CTGATTA | 235 | 0.0 | 70.10129 | 44 |
ATTAGTC | 1130 | 0.0 | 70.089355 | 44 |
GTAGTCG | 145 | 0.0 | 69.91534 | 44 |
TGCACGA | 110 | 0.0 | 69.12085 | 44 |
TCGAACT | 140 | 0.0 | 67.88655 | 44 |
ACCACGT | 190 | 0.0 | 66.69556 | 44 |
CATACGT | 105 | 0.0 | 66.37796 | 44 |