FastQCFastQC Report
Tue 24 May 2016
ERR841241.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841241.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3883006
Sequences flagged as poor quality0
Sequence length24-50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC1065532.744085381274198No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA788372.0303084775042843No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT717011.8465333301055935No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA257610.6634293122390231No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC191150.49227325427774254No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAG175950.4531283237780214No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA73650.18967264021739857No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC70490.18153461519245656No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC60380.15549808576139207No Hit
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA52890.1362089061927795No Hit
ATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCAC50300.12953881606157705No Hit
CTATGTGGCTGATTGAAGAGTATGCAATGAGCGATTTTAGGTCTGTTTGT48160.12402762189911631No Hit
TTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCGGGCTCGG46980.12098873913663796No Hit
CTCTTTCCGGTGTGGAGTCTGGAGACGACGTGCAGAAATGGCACCTCGA45910.1182331420554076No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG44960.11578658389917501No Hit
CCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG44700.11511699956167978No Hit
CTTTTTGTCCGACATCTTGACGAGGCTGCGGTGTCTGCTGCTATTCTCC44090.11354605169294099No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA43160.11115100002420805No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGTAT600.0116.1614444
CTATCAT88100.0115.3583444
CAGGACG650.097.4781344
AATCGCA6800.095.0411644
ACTTCTA11300.091.9572444
TAAGCCA42200.090.0864144
ACGAACA2350.083.58230644
TATCGAC1300.082.8564144
CAATCGA1450.078.65475544
GGATACC900.077.4409544
ACCACTC3250.076.0329344
CTATTAC1450.074.2850544
GATCTAG950.073.3651144
CTGATTA2350.070.1012944
ATTAGTC11300.070.08935544
GTAGTCG1450.069.9153444
TGCACGA1100.069.1208544
TCGAACT1400.067.8865544
ACCACGT1900.066.6955644
CATACGT1050.066.3779644