FastQCFastQC Report
Tue 24 May 2016
ERR841239.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841239.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2615393
Sequences flagged as poor quality0
Sequence length24-50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA677202.589285816701352No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC517391.9782495403176503No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT430501.6460241348049793No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA143100.5471453047400525No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC100510.384301709150403No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAG72460.2770520529801831No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA66660.2548756534868756No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG48910.18700822400304656No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCC48420.1851347005975775No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG44520.1702229836969052No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC40020.1530171565038218No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA39390.15060834069679013No Hit
CGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAG37230.1423495436441101No Hit
CCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG36130.1381436747746897No Hit
AGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGTCTCGGA34810.13309663213138523No Hit
CTCTCTGCTCCTCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCG34140.1305348756381928No Hit
CCTTTCGGCCGGAACCGCCATCTTCCAGTAATTCGCCAAAATGACGAAC32260.12334666338863796No Hit
ATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAACCACTC30410.11627315665370366No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTG29440.11256434501430569No Hit
TGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCC28910.11053788092267587No Hit
CTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAACC27710.10594966033785362No Hit
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA27680.10583495482323307No Hit
AGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG27430.10487907553472843No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATACCGG151.766488E-4132.3998444
GACAATC1000.0125.7798544
CTATCAT55800.0113.7737144
TAAGCCA17100.0108.78467644
GACACGC4900.0106.73048444
GACTAGT1300.096.7537444
AATCGCA3850.096.29079444
ACTTCTA11000.086.05990644
CCGCACA1900.083.6209644
GCCGACC1200.077.23324644
ACCACTC8800.075.2271944
TGGACCC1700.073.9881544
TGCGACA750.069.1219343
AAAGTCG2400.068.9582544
AGCGAAT5450.066.8072744
ATCTAAC1200.066.2418543
CGATGTA1200.066.2418543
CTGATTC2050.064.5852944
GAGCGAA3050.062.3230543
CGTTGAT950.061.84594343