FastQCFastQC Report
Tue 24 May 2016
ERR841227.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841227.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7756089
Sequences flagged as poor quality0
Sequence length24-50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC1075081.3861109639149318No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA851341.0976408341884678No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT727620.9381274505746388No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA203650.26256789987840523No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC171370.22094898601601914No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC121500.15665111630359063No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA103840.13388190878160372No Hit
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA87930.11336899305822819No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATCAT102100.070.7604144
AATCGCA11500.067.6799744
ATACGAC950.057.831844
GCTCGAA603.1457603E-853.41409344
CGACGAA1150.051.10948643
CCTTAGC126800.049.35516443
TAAGCCA38950.048.3107144
ACTTCTA23250.047.45731444
TACGGGG750.045.9988942
ACCTTAG125250.044.60200542
TACGTCC850.044.34992640
ACGATAG1700.043.09036344
AGGCTAA111350.043.08799442
GAGGCTA111550.042.7465541
CGCTACT87450.042.4357533
GACGCTA86850.042.43531831
CGACGGG9950.041.8723644
CCTATCA109050.041.8608843
GACAACC146350.041.79343438
CCCCTAT94900.041.7125241