Basic Statistics
Measure | Value |
---|---|
Filename | ERR841227.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7756089 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 107508 | 1.3861109639149318 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAA | 85134 | 1.0976408341884678 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 72762 | 0.9381274505746388 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 20365 | 0.26256789987840523 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAAC | 17137 | 0.22094898601601914 | No Hit |
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC | 12150 | 0.15665111630359063 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA | 10384 | 0.13388190878160372 | No Hit |
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA | 8793 | 0.11336899305822819 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATCAT | 10210 | 0.0 | 70.76041 | 44 |
AATCGCA | 1150 | 0.0 | 67.67997 | 44 |
ATACGAC | 95 | 0.0 | 57.8318 | 44 |
GCTCGAA | 60 | 3.1457603E-8 | 53.414093 | 44 |
CGACGAA | 115 | 0.0 | 51.109486 | 43 |
CCTTAGC | 12680 | 0.0 | 49.355164 | 43 |
TAAGCCA | 3895 | 0.0 | 48.31071 | 44 |
ACTTCTA | 2325 | 0.0 | 47.457314 | 44 |
TACGGGG | 75 | 0.0 | 45.99889 | 42 |
ACCTTAG | 12525 | 0.0 | 44.602005 | 42 |
TACGTCC | 85 | 0.0 | 44.349926 | 40 |
ACGATAG | 170 | 0.0 | 43.090363 | 44 |
AGGCTAA | 11135 | 0.0 | 43.087994 | 42 |
GAGGCTA | 11155 | 0.0 | 42.74655 | 41 |
CGCTACT | 8745 | 0.0 | 42.43575 | 33 |
GACGCTA | 8685 | 0.0 | 42.435318 | 31 |
CGACGGG | 995 | 0.0 | 41.87236 | 44 |
CCTATCA | 10905 | 0.0 | 41.86088 | 43 |
GACAACC | 14635 | 0.0 | 41.793434 | 38 |
CCCCTAT | 9490 | 0.0 | 41.71252 | 41 |