##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR841220.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1844966 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.197216642474714 38.0 35.0 39.0 31.0 39.0 2 36.90383129011592 38.0 35.0 39.0 33.0 39.0 3 36.96801404470326 38.0 36.0 39.0 33.0 39.0 4 37.454773692306524 39.0 37.0 40.0 33.0 41.0 5 38.066513962858934 39.0 37.0 40.0 33.0 41.0 6 38.03983759050302 39.0 37.0 41.0 33.0 41.0 7 38.016432281136886 39.0 37.0 41.0 33.0 41.0 8 37.91783751028474 39.0 37.0 40.0 33.0 41.0 9 37.9073023567914 39.0 37.0 40.0 33.0 41.0 10 37.74144401577048 39.0 36.0 40.0 33.0 41.0 11 37.64991820987487 39.0 36.0 40.0 33.0 41.0 12 37.6348014001342 39.0 36.0 40.0 33.0 41.0 13 37.44562935035117 39.0 36.0 40.0 32.0 41.0 14 37.40248817593387 39.0 36.0 40.0 32.0 41.0 15 37.30027003207647 39.0 36.0 40.0 32.0 41.0 16 37.21561101939006 38.0 36.0 40.0 32.0 41.0 17 37.10239321483431 38.0 35.0 40.0 31.0 41.0 18 37.069880962576 38.0 35.0 40.0 31.0 41.0 19 36.98709136103321 38.0 35.0 40.0 31.0 41.0 20 36.86788266016826 38.0 35.0 40.0 31.0 41.0 21 36.72499222207889 38.0 35.0 40.0 31.0 41.0 22 36.70665638282765 38.0 35.0 40.0 31.0 41.0 23 36.70252947750799 38.0 35.0 40.0 31.0 41.0 24 36.66544803535675 38.0 35.0 40.0 31.0 41.0 25 36.65798636648042 38.0 35.0 40.0 31.0 41.0 26 36.67132926538113 38.0 35.0 40.0 31.0 41.0 27 36.72512585355009 38.0 35.0 40.0 31.0 41.0 28 36.697339625299975 38.0 35.0 40.0 31.0 41.0 29 36.72866302445417 38.0 35.0 40.0 31.0 41.0 30 36.76178271997381 38.0 35.0 40.0 31.0 41.0 31 36.6892980936892 38.0 35.0 40.0 31.0 41.0 32 36.63508725787945 38.0 35.0 40.0 31.0 41.0 33 36.53716115217994 38.0 35.0 40.0 31.0 41.0 34 36.48837030661503 38.0 35.0 40.0 31.0 41.0 35 36.37974488504419 38.0 34.0 40.0 31.0 41.0 36 36.285169155880894 37.0 34.0 40.0 31.0 41.0 37 36.1806926282979 37.0 34.0 40.0 31.0 41.0 38 36.10840297400496 37.0 34.0 40.0 31.0 41.0 39 35.97226590577282 37.0 34.0 40.0 30.0 41.0 40 35.84258553701682 37.0 34.0 40.0 30.0 41.0 41 35.67119203226603 36.0 34.0 40.0 30.0 41.0 42 35.54046316206126 36.0 34.0 39.0 30.0 41.0 43 35.405001291269656 36.0 33.0 39.0 30.0 41.0 44 35.30096193870199 36.0 33.0 39.0 29.0 41.0 45 35.23886395294846 35.0 33.0 39.0 30.0 40.0 46 35.17887409984045 35.0 33.0 39.0 29.0 40.0 47 35.12606165808399 35.0 33.0 39.0 29.0 40.0 48 35.14488262723686 35.0 33.0 39.0 30.0 40.0 49 35.12601459890728 35.0 33.0 39.0 29.0 40.0 50 35.52967950132972 36.0 34.0 39.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 18.0 22 42.0 23 97.0 24 225.0 25 571.0 26 1345.0 27 3172.0 28 7021.0 29 15140.0 30 29894.0 31 52627.0 32 83600.0 33 121737.0 34 167487.0 35 195967.0 36 243737.0 37 280127.0 38 274908.0 39 247583.0 40 119666.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 52.604221432806895 16.358729645966374 31.037048921226734 2 28.078024202072015 25.476783854011405 28.110003111168446 18.335188832748138 3 26.210672717003998 19.046042040883137 27.424299417983853 27.31898582412901 4 21.603758551648106 21.942734988070242 30.039306957418187 26.414199502863468 5 22.360520464875773 22.281657222951534 26.343303887442914 29.01451842472978 6 25.354017364005628 23.880169065446193 26.347260599924333 24.41855297062385 7 30.931355916585996 20.229207475910123 23.164979734043882 25.67445687346 8 26.80179472142034 19.584480147601635 26.19067234843352 27.423052782544506 9 30.000986468043312 21.72256832917246 23.339129284767306 24.937315918016917 10 26.652577879483957 19.778467462273017 26.22850502394082 27.340449634302207 11 28.209842349398308 22.738359406081194 25.19282198154329 23.858976262977205 12 28.701558727911518 19.42501921444623 26.51864587206485 25.354776185577403 13 26.485095118284026 22.016286478992026 23.164004106308735 28.334614296415218 14 28.061330127492862 21.916284636139636 24.268848314819895 25.753536921547603 15 24.870539619700306 22.61835719465833 26.405635659410525 26.105467526230836 16 28.538466291519736 24.2297148023324 20.958218200226998 26.27360070592087 17 28.70470241728032 21.183534005504708 23.10476182216908 27.007001755045895 18 29.11164758591757 21.738178372934787 21.82018530422783 27.329988736919812 19 29.13235257451899 22.003549116894295 22.363935161948785 26.500163146637934 20 29.77876015059356 20.774637581397165 23.49636795474822 25.950234313261056 21 30.282726077336925 25.073090777824632 20.387259169003656 24.256923975834784 22 29.64466553855193 23.668186839215466 21.928425781288112 24.758721840944496 23 28.616408107249676 25.523342977594165 21.37627468473674 24.483974230419424 24 30.225272444045036 24.807178018456707 21.147489980845176 23.820059556653074 25 28.41661269607789 26.410388698009857 21.498260134578864 23.674738471333384 26 28.91847623912452 26.008761458466356 21.206338454363237 23.866423848045883 27 29.219357109693995 25.471343790859947 21.752916652865395 23.556382446580663 28 29.103053868809543 25.122775161806416 21.70069449494582 24.073476474438223 29 29.201309357190684 24.45652767439655 22.290685343303913 24.05147762510885 30 28.065080331647774 25.861931848855647 22.493383820822434 23.579603998674152 31 26.224974243800325 24.343246243349736 25.132653228853513 24.299126283996422 32 27.10997851503148 23.66491979122795 25.040147332268266 24.184954361472304 33 25.26509017469381 23.520788138147044 26.00738460137471 25.206737085784432 34 25.846800753155335 22.33433395168846 28.049350666631987 23.769514628524217 35 26.66105369740593 23.522376670592077 25.274197828429017 24.54237180357298 36 26.14815817934586 24.379582445211625 23.126782040555856 26.34547733488666 37 24.987231318496868 25.778545739386367 26.376251315158566 22.857971626958204 38 26.703385431321138 25.0609678604375 23.144645419016914 25.091001289224447 39 26.089544558181686 25.65469321346439 24.00399904504238 24.25176318331154 40 26.317958716876593 25.017881737780378 23.041089702066234 25.62306984327679 41 24.852745081899744 25.967898592476747 23.6411227261503 25.53823359947321 42 25.139472811493736 27.002497940669894 23.87244990746387 23.9855793403725 43 24.18031561348901 26.9663998042707 23.63968139620231 25.213603186037975 44 23.077954926063754 26.228041425870842 24.524527639142995 26.16947600892241 45 24.618831872353 24.107652910469813 25.594687003137707 25.678828214039484 46 24.165672478475226 24.53357002199192 23.80323698092596 27.497520518606887 47 25.34286241155072 24.885204528725158 24.434861856813892 25.337071202910234 48 24.47146930627063 24.298553266111355 24.737863268611346 26.492114159006668 49 26.66507390618222 23.971254864730625 22.783348946577554 26.580322282509606 50 23.160732868720633 27.319647230719095 23.956723744652223 25.562896155908042 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 29156.0 1 28822.0 2 17330.0 3 6161.5 4 6052.5 5 4589.5 6 2108.5 7 1030.5 8 1049.0 9 987.0 10 904.5 11 855.5 12 851.0 13 922.5 14 1128.0 15 1452.0 16 1900.5 17 2812.0 18 4501.5 19 7224.0 20 11057.0 21 14151.5 22 14929.0 23 15000.5 24 14907.0 25 14634.0 26 14473.5 27 14762.5 28 15511.5 29 16271.5 30 17234.0 31 19127.0 32 21928.0 33 23880.0 34 25936.5 35 29601.0 36 33375.5 37 36775.0 38 40804.0 39 47791.0 40 56457.0 41 66856.5 42 79157.5 43 88338.5 44 94167.0 45 99361.0 46 107281.5 47 115879.5 48 128467.5 49 142026.0 50 154808.5 51 168679.5 52 177890.0 53 177487.5 54 167418.5 55 151201.5 56 134311.0 57 124197.0 58 116393.0 59 109359.0 60 108250.0 61 108321.0 62 103731.0 63 96589.0 64 87184.5 65 78421.0 66 72190.0 67 67759.0 68 61504.5 69 53432.0 70 46234.0 71 40034.5 72 35702.0 73 32538.0 74 28594.0 75 24417.0 76 20949.0 77 16669.0 78 13229.0 79 10824.5 80 8332.0 81 6219.5 82 4600.0 83 3326.0 84 2467.0 85 1960.0 86 1503.0 87 1103.5 88 821.0 89 615.0 90 401.5 91 216.5 92 155.0 93 142.5 94 106.5 95 59.5 96 34.0 97 30.0 98 15.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 22986.0 25 20910.0 26 19833.0 27 21109.0 28 20343.0 29 17114.0 30 18227.0 31 16287.0 32 19008.0 33 15838.0 34 17813.0 35 18321.0 36 17560.0 37 18046.0 38 19198.0 39 21695.0 40 22053.0 41 22993.0 42 24212.0 43 25174.0 44 24826.0 45 30000.0 46 79086.0 47 208330.0 48 308739.0 49 414733.0 50 380532.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.532768978641673 #Duplication Level Percentage of deduplicated Percentage of total 1 61.410833414785856 16.293994557803618 2 12.316137440714453 6.535624588473514 3 6.370552627246595 5.070852033750381 4 4.264978362875664 4.526467424043415 5 3.018910272104178 4.00500244084942 6 2.2119717042358933 3.5213840529469955 7 1.7353916477421985 3.2231321973905644 8 1.406794335823252 2.9860919290287993 9 1.1213186424627133 2.6776519642716554 >10 5.648805407712736 24.988328206004557 >50 0.27079567704501883 4.965556871834227 >100 0.18713035487540028 10.134322840557859 >500 0.024329200151514054 4.554060493370106 >1k 0.011823536522231127 6.148980112155136 >5k 2.2737570235059864E-4 0.3685502875196786 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG 6109 0.33111721300013114 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 4637 0.2513325448815859 Illumina Single End Adapter 1 (100% over 32bp) AAAAAAAAAAAAAAAAAAAAAAAAAAA 4004 0.21702296952897776 No Hit AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG 3754 0.20347258431862703 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAA 3644 0.19751041482607268 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAA 3579 0.1939873146713815 No Hit ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT 3375 0.18293020033973525 No Hit AAAAAAAAAAAAAAAAAAAAAAAAA 3206 0.17377013993753815 No Hit ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG 3039 0.16471848261702385 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2986 0.16184580095242948 No Hit ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGGA 2951 0.15994874702298037 No Hit AAAAAAAAAAAAAAAAAAAAAAAA 2904 0.15740127460343442 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 2547 0.13805132452305355 Illumina Single End Adapter 1 (100% over 32bp) CTCTTTCCCTTCGGTGTGCCACTGAAGATCCTGGTGTCGCCATGGGCCG 2531 0.1371840998695911 No Hit ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCA 2421 0.13122193037703678 No Hit AAAACAGCCGGGGCTCCAGCGGGAGAACGATAATGCAAAGTGCTATGTT 2223 0.12049002529043895 No Hit AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGC 2113 0.11452785579788463 No Hit TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG 2090 0.11328122035853234 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 2058 0.11154677105160746 Illumina Single End Adapter 1 (100% over 32bp) AAACAGCCGGGGCTCCAGCGGGAGAACGATAATGCAAAGTGCTATGTTCT 1993 0.10802367089691625 No Hit CGGCAAGTTTGAATTTCGTGGAGGCTCGGG 1985 0.10759005857018504 No Hit AAGCAGTGGTATCAACGCAGAGTGCAG 1966 0.10656022929419837 No Hit AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 1881 0.10195309832267913 Illumina Single End Adapter 2 (100% over 34bp) >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.4754559162607875 0.0 0.0 0.0 0.0 2 1.0491250245261972 0.0 0.0 0.0 0.0 3 1.4305954689679918 0.0 0.0 0.0 0.0 4 1.714503139895261 0.0 0.0 0.0 0.0 5 2.0452951436503435 0.0 0.0 0.0 0.0 6 2.29586886696015 0.0 0.0 0.0 0.0 7 2.4815633458827966 0.0 0.0 0.0 0.0 8 2.647636867020856 0.0 0.0 0.0 0.0 9 2.780647448245659 0.0 0.0 0.0 0.0 10 2.8878038944891125 0.0 0.0 0.0 0.0 11 3.0081855166978686 0.0 0.0 0.0 0.0 12 3.101032756159192 0.0 0.0 0.0 0.0 13 3.192091344772749 0.0 0.0 0.0 0.0 14 3.275724322291034 0.0 0.0 0.0 0.0 15 3.3893307518946147 0.0 0.0 0.0 0.0 16 3.4629906458980817 0.0 0.0 0.0 0.0 17 3.5347534859720993 0.0 0.0 0.0 0.0 18 3.6046734736575092 0.0 0.0 0.0 0.0 19 3.8150838552038357 0.0 0.0 0.0 0.0 20 3.881426541193713 0.0 0.0 0.0 0.0 21 3.984734678037427 0.0 0.0 0.0 0.0 22 4.029992964639999 0.0 0.0 0.0 0.0 23 4.080400397622504 0.0 0.0 0.0 0.0 24 4.122894405642164 0.0 0.0 0.0 0.0 25 4.175795109503373 0.0 0.0 0.0 0.0 26 4.32674640074668 0.0 0.0 0.0 0.0 27 4.368589990276243 0.0 0.0 0.0 0.0 28 4.412710044521146 0.0 0.0 0.0 0.0 29 4.458022532664558 0.0 0.0 0.0 0.0 30 4.498836292918135 0.0 0.0 0.0 0.0 31 4.5379156038647865 0.0 0.0 0.0 0.0 32 4.572170977676554 0.0 0.0 0.0 0.0 33 4.6044208944771885 0.0 0.0 0.0 0.0 34 4.633310315745656 0.0 0.0 0.0 0.0 35 4.661169907738137 0.0 0.0 0.0 0.0 36 4.684422368759099 0.0 0.0 0.0 0.0 37 4.703121900349383 0.0 0.0 0.0 0.0 38 4.714558425466919 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 45 2.8079023E-5 86.29065 44 CGTGCGC 600 0.0 82.515434 44 ACTTCTA 365 0.0 74.47001 44 TCGTGCG 750 0.0 73.46553 43 ACGACAC 220 0.0 70.60144 44 ACATTGG 235 0.0 66.09496 44 ATGTTCT 505 0.0 65.35876 44 CGCTACC 280 0.0 62.406635 44 CGGGTAG 50 0.0046068556 58.24619 44 GGTCGAG 100 3.6464735E-7 58.24619 44 AACGACA 360 0.0 58.18551 43 GTTCAGG 1610 0.0 57.415573 43 TTCAGGA 985 0.0 57.16208 44 AGGTCGA 85 3.6379788E-12 53.572334 43 CGGGATA 55 0.006717226 52.95108 44 ACATTTG 235 0.0 49.571224 44 TACGCTA 420 0.0 49.349632 42 CTCGTGC 970 0.0 49.180046 42 AATCCCG 250 0.0 49.1794 43 AAACCGT 100 2.484487E-5 48.53849 44 >>END_MODULE