##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR841216.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8703895 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.457419350761928 33.0 31.0 35.0 21.0 35.0 2 32.44116651223389 34.0 33.0 35.0 24.0 37.0 3 33.393200170728164 35.0 33.0 35.0 30.0 37.0 4 33.785501318662504 35.0 33.0 35.0 30.0 37.0 5 34.10784746369298 35.0 34.0 35.0 31.0 38.0 6 34.1397594984774 35.0 34.0 35.0 31.0 38.0 7 34.08718717309894 35.0 33.0 35.0 31.0 38.0 8 33.959083375890906 35.0 33.0 35.0 30.0 38.0 9 33.96464548343012 35.0 33.0 35.0 30.0 38.0 10 33.84752952557447 35.0 33.0 35.0 30.0 38.0 11 33.741545825173674 35.0 33.0 35.0 30.0 38.0 12 33.68626229980946 35.0 33.0 35.0 30.0 38.0 13 33.60387504674631 35.0 33.0 35.0 29.0 37.0 14 33.51186911147251 35.0 33.0 35.0 29.0 37.0 15 33.418313754933855 35.0 33.0 35.0 29.0 36.0 16 33.48087700966062 35.0 33.0 35.0 29.0 36.0 17 33.481592551380736 35.0 33.0 35.0 29.0 37.0 18 33.42722091661262 35.0 33.0 35.0 29.0 36.0 19 33.38894253664595 35.0 33.0 35.0 29.0 36.0 20 33.31824671598175 35.0 33.0 35.0 29.0 36.0 21 33.0080512230444 34.0 33.0 35.0 27.0 36.0 22 32.99787888066205 34.0 33.0 35.0 27.0 36.0 23 33.13321748481571 35.0 33.0 35.0 27.0 36.0 24 33.14588836377277 35.0 33.0 35.0 27.0 36.0 25 33.157405202621156 35.0 33.0 35.0 28.0 36.0 26 33.21011359714659 35.0 33.0 35.0 29.0 36.0 27 33.26537687194505 35.0 33.0 35.0 29.0 36.0 28 33.32387945607281 35.0 33.0 35.0 29.0 36.0 29 33.448356018398655 35.0 33.0 35.0 29.0 36.0 30 33.542645710363075 35.0 33.0 35.0 30.0 36.0 31 33.530339579002586 35.0 33.0 35.0 30.0 36.0 32 33.47078173855281 35.0 33.0 35.0 29.0 36.0 33 33.43351228927594 35.0 33.0 35.0 29.0 36.0 34 33.49356832517422 35.0 33.0 35.0 29.0 36.0 35 33.473811596991375 35.0 33.0 35.0 29.0 36.0 36 33.40417307760374 35.0 33.0 35.0 29.0 35.0 37 33.40166849380629 35.0 33.0 35.0 29.0 35.0 38 33.35019850268569 35.0 33.0 35.0 29.0 35.0 39 33.24866696876278 35.0 33.0 35.0 29.0 35.0 40 33.234725872008454 35.0 33.0 35.0 29.0 35.0 41 33.209146749935094 35.0 33.0 35.0 29.0 35.0 42 33.18525093664444 35.0 33.0 35.0 29.0 35.0 43 33.18956787657873 35.0 33.0 35.0 29.0 35.0 44 33.18586827012037 34.0 33.0 35.0 29.0 35.0 45 33.20969808903689 35.0 33.0 35.0 29.0 35.0 46 33.18776311919565 34.0 33.0 35.0 29.0 35.0 47 33.17951506107338 34.0 33.0 35.0 29.0 35.0 48 33.21789613394384 34.0 33.0 35.0 29.0 35.0 49 33.242172844367644 34.0 33.0 35.0 29.0 35.0 50 33.35322191700861 34.0 33.0 35.0 29.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 43.0 20 263.0 21 896.0 22 2509.0 23 6345.0 24 15414.0 25 35044.0 26 71273.0 27 133565.0 28 231549.0 29 371596.0 30 559590.0 31 803470.0 32 1133653.0 33 1665261.0 34 2564511.0 35 346984.0 36 206986.0 37 195178.0 38 175627.0 39 135531.0 40 48600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 50.52131258476808 18.85938421821495 30.61930319701697 2 25.534751970238613 27.140837521592342 26.868028623966627 20.45638188420242 3 29.88898648248859 19.535748076005053 23.23519527751656 27.3400701639898 4 22.56131306731067 21.48394483159551 26.970729770981844 28.98401233011198 5 24.446170363957744 23.800160732637515 25.44390758390353 26.309761319501213 6 25.81684406808676 25.207002152484602 23.15323197258239 25.822921806846246 7 32.28737249243011 23.544206358187914 20.237399463113928 23.931021686268046 8 28.748634950214818 20.919726168571657 25.601457738173544 24.730181143039985 9 27.989756310249607 23.70899465124522 21.945944890189967 26.355304148315206 10 29.04190595130111 21.908915491282926 23.774264280531877 25.274914276884086 11 30.32855979995163 21.763394434330838 24.17329253167691 23.734753234040625 12 27.869074707358028 20.356817263995026 24.220248520920805 27.553859507726138 13 26.869223491321986 21.286297686265744 23.462840486931423 28.38163833548084 14 26.8402939143912 22.302877045276855 21.860052309914124 28.996776730417817 15 23.618127286691763 24.048808033644708 24.164376982948436 28.16868769671509 16 26.16644617151287 25.532729887021844 24.388793752681988 23.912030188783298 17 28.40869518761428 22.280232011070904 19.815117254976077 29.495955546338738 18 27.81987834182283 22.240766921016395 20.36093036508368 29.5784243720771 19 26.288391576414927 21.454957809118792 24.298362974277605 27.958287640188672 20 29.129211692006855 20.2977517536689 23.639738301070956 26.933298253253284 21 29.461809913837428 23.70538707096076 22.101323602823793 24.73147941237802 22 26.688810009771487 22.567184002104803 24.376052330594522 26.367953657529185 23 26.94105340195395 23.75283709189966 22.506130875889472 26.799978630256916 24 29.17475452082085 24.25674942080528 22.486576412054603 24.081919646319264 25 25.460406059375153 24.683281157715104 23.292911819703473 26.56340096320627 26 27.600058213619334 23.668837510049908 22.632369616662366 26.098734659668395 27 27.53989537028928 23.431841519479008 24.848004461583322 24.18025864864839 28 28.188312666169747 22.18333232166396 23.87157848634802 25.75677652581827 29 28.48415376094895 21.275611007249587 25.48884356374495 24.751391668056506 30 25.932799362642427 22.866380390231193 26.202198182127933 24.998622064998447 31 27.34772794954436 21.466625200589608 27.95835019320172 23.227296656664308 32 27.12469973700804 21.756178277479236 25.165819565608277 25.95330241990445 33 24.539726057902083 22.559373442431617 26.59064368468037 26.310256814985927 34 24.270149053491817 22.037259458280932 29.896502684337634 23.79608880388962 35 28.14838791245026 22.295186768038494 23.35870501425398 26.197720305257256 36 24.99745475719887 24.393525011639788 22.93852073631517 27.670499494846172 37 23.754259154509302 25.20485254699481 25.632155479917216 25.408732818578667 38 28.22700608187404 24.88929090858542 21.163655122891374 25.720047886649166 39 25.105258487235865 25.67118138870752 24.671606238156055 24.551953885900556 40 25.824288970221094 23.939900518190814 22.49521822823186 27.74059228335623 41 25.31301564807943 24.581894153264475 22.927865809198973 27.177224389457123 42 24.705688985989465 24.601934589383728 25.903768286768898 24.788608137857914 43 23.246463345363072 26.37760855964071 24.49546976527753 25.880458329718692 44 22.379074442664606 25.38696895548395 24.45317316258543 27.78078343926601 45 25.15349316118323 22.117708708298878 27.852642761122244 24.876155369395647 46 24.321676551009695 23.26550516541069 23.947478752799046 28.46533953078057 47 27.352153752594553 22.24798088383031 23.469173180231437 26.930692183343695 48 23.438329782135643 23.60695770296876 24.56444533314336 28.390267181752243 49 27.11426825410396 22.431201599757284 21.885696340299024 28.568833805839738 50 23.56655989470783 26.247674788529462 23.720204165727825 26.46556115103489 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 231592.0 1 228735.0 2 122858.5 3 19759.0 4 19388.0 5 15172.5 6 7770.0 7 4452.0 8 4535.5 9 4348.0 10 4151.0 11 4067.0 12 4038.0 13 4020.0 14 4142.0 15 4428.0 16 4751.0 17 5438.0 18 6670.0 19 8900.5 20 12151.5 21 17116.0 22 24751.0 23 34741.5 24 44075.0 25 51365.0 26 57930.0 27 62580.5 28 65170.0 29 68627.0 30 73376.5 31 83265.5 32 96997.0 33 108280.5 34 122047.5 35 141577.5 36 158988.0 37 173093.5 38 189150.0 39 211572.5 40 245720.0 41 312288.0 42 402995.0 43 492423.5 44 527975.5 45 495710.5 46 472474.5 47 482141.5 48 523362.5 49 586601.5 50 673983.0 51 748573.0 52 808667.0 53 839846.0 54 809637.0 55 746316.0 56 677402.5 57 658455.5 58 669788.5 59 635317.5 60 575314.0 61 541348.5 62 515274.5 63 481901.5 64 444769.0 65 411592.0 66 370598.0 67 331152.5 68 297542.0 69 260677.0 70 226549.5 71 200396.0 72 182428.5 73 165551.0 74 140895.5 75 116265.5 76 99884.0 77 81016.5 78 64190.0 79 51594.5 80 39832.0 81 30172.5 82 22521.0 83 16605.5 84 12248.5 85 9224.0 86 6722.5 87 4576.5 88 3050.5 89 2266.0 90 1576.0 91 948.5 92 627.5 93 490.0 94 323.0 95 153.0 96 104.5 97 98.0 98 61.0 99 22.5 100 21.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 136675.0 25 129332.0 26 125144.0 27 124957.0 28 111328.0 29 93499.0 30 101819.0 31 111702.0 32 135344.0 33 98344.0 34 108704.0 35 109474.0 36 92254.0 37 103501.0 38 124045.0 39 126366.0 40 119588.0 41 114028.0 42 113405.0 43 110564.0 44 104909.0 45 124216.0 46 373491.0 47 870150.0 48 1467029.0 49 1685480.0 50 1788547.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.12424674101944 #Duplication Level Percentage of deduplicated Percentage of total 1 57.04351796347282 11.479578304727019 2 13.577481654709223 5.464731818820667 3 7.434726550878967 4.488548146856903 4 4.861432680953259 3.9133068314543613 5 3.5003378289120763 3.522083107297546 6 2.4737196317999257 2.9869046543067284 7 1.9368064601153554 2.7283739765073287 8 1.4776828835987756 2.37898039636183 9 1.1543688011812716 2.090772232659605 >10 5.908753692578539 20.487938548952442 >50 0.3412768440404925 4.7494110631784725 >100 0.23471705673285873 9.41033219598165 >500 0.028194063499637406 4.028667576765464 >1k 0.021841218379688 8.481915853507601 >5k 0.002783091538480794 3.9501444432440103 >10k+ 0.0023595776087119774 9.838310849378484 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 55569 0.6384383083665416 Illumina Single End Adapter 1 (100% over 32bp) AAAAAAAAAAAAAAAAAAAAAAAAAAA 36061 0.4143087663626457 No Hit CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCC 36047 0.4141479188340393 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAA 35107 0.403348156199035 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 33551 0.3854711023053472 Illumina Single End Adapter 1 (100% over 31bp) AAAAAAAAAAAAAAAAAAAAAAAAA 33471 0.38455197357045323 No Hit CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCCG 33206 0.3815073596361169 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAA 30735 0.35311777083707924 No Hit AAAAAAAAAAAAAAAAAAAAAAAA 29144 0.33483859812187533 No Hit AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG 27181 0.31228547678941443 No Hit TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA 26610 0.30572519544410864 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 22881 0.2628823072888632 Illumina Single End Adapter 1 (100% over 32bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 22628 0.259975562664761 No Hit CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGAC 21354 0.24533843756157445 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 19475 0.2237504014007522 Illumina Single End Adapter 1 (100% over 32bp) ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT 18187 0.2089524287689592 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 18158 0.20861924460256012 Illumina Single End Adapter 1 (100% over 32bp) CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC 18023 0.20706821486242652 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 17816 0.2046899692608884 Illumina Single End Adapter 1 (100% over 31bp) CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATC 17451 0.2004964444079346 No Hit AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGC 17338 0.19919817506989684 No Hit CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCC 16272 0.18695078467743464 No Hit CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGA 15775 0.18124069741190582 No Hit CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTAG 14626 0.1680397109569911 No Hit CGGCAAGTTTGAATTTCGTGGAGGCTCGGG 14460 0.1661325188320861 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 13619 0.15647017800651317 Illumina Single End Adapter 1 (100% over 31bp) ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG 13481 0.15488468093882107 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13440 0.1544136274621879 No Hit TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAAT 13348 0.15335662941705983 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 13304 0.15285110861286813 Illumina Single End Adapter 1 (100% over 31bp) CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA 13071 0.15017414617248945 No Hit TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATC 12849 0.14762356393315865 No Hit CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGG 12808 0.1471525104565255 No Hit AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG 12507 0.14369428859148692 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGA 12157 0.13967310037632577 Illumina Single End Adapter 1 (100% over 32bp) TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGC 11958 0.137386767648277 No Hit ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG 11826 0.13587020523570192 No Hit AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 11419 0.13119413779692884 Illumina Single End Adapter 2 (100% over 34bp) ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAA 11124 0.12780485058700733 Illumina Single End Adapter 1 (100% over 32bp) ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGGA 9686 0.11128351157728811 No Hit AAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 9613 0.11044480660669735 Illumina Single End Adapter 2 (100% over 34bp) CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCT 9308 0.10694062830491408 No Hit CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCTG 9229 0.10603298867920626 No Hit CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTG 8801 0.10111564994752349 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.5475249873763413 0.0 0.0 0.0 0.0 2 1.305001956020839 0.0 0.0 0.0 0.0 3 1.6866127176396315 0.0 0.0 0.0 0.0 4 2.019888796912187 0.0 0.0 0.0 0.0 5 2.445387955622167 0.0 0.0 0.0 0.0 6 2.6218376945034376 0.0 0.0 0.0 0.0 7 2.745219238053768 0.0 0.0 0.0 0.0 8 2.8573874110383914 0.0 0.0 0.0 0.0 9 2.9608123719323363 0.0 0.0 0.0 6.893465511704818E-5 10 3.0408914629599737 0.0 0.0 0.0 6.893465511704818E-5 11 3.1280823125738535 0.0 0.0 0.0 6.893465511704818E-5 12 3.187756745686845 0.0 0.0 0.0 6.893465511704818E-5 13 3.2386649884907848 0.0 0.0 0.0 6.893465511704818E-5 14 3.2980292156557494 3.4467327558524086E-4 0.0 0.0 6.893465511704818E-5 15 3.382589059265995 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 16 3.4416086131553745 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 17 3.4960899689162153 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 18 3.564415701246396 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 19 3.725412588272262 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 20 3.774677888462579 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 21 3.859180286526894 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 22 3.898450061725239 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 23 3.943027805367597 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 24 3.9780925666038023 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 25 4.032861150094297 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 26 4.148073937013256 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 27 4.1815302229633975 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 28 4.214595879201208 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 29 4.244950105671082 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 30 4.2729720429761615 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 31 4.2988110495358685 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 32 4.322168408511362 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 33 4.3434692169425295 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 34 4.3612773361811 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 35 4.377902077173495 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 36 4.392619626040985 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 37 4.403890442152623 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 38 4.411415808669567 4.250970398884637E-4 0.0 0.0 8.042376430322287E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGCCA 4290 0.0 130.10017 44 CTATACG 685 0.0 117.57006 44 CGTGCGC 3505 0.0 104.73382 44 AATCGCA 285 0.0 82.145546 44 TTAAGCC 3685 0.0 79.040344 43 TCGTGCG 6000 0.0 77.75055 43 ATGTTCT 2205 0.0 76.445656 44 AATCCCG 4950 0.0 73.527115 43 CCAGAAT 2005 0.0 70.05929 44 CTATCAT 1800 0.0 69.19393 44 TATACGC 280 0.0 66.889946 44 CGCTACC 1160 0.0 62.16152 44 TTTGGAC 3765 0.0 60.48213 43 ACTTCTA 1580 0.0 60.454964 44 TTCAGGA 3240 0.0 59.251278 44 ATTAAGC 5190 0.0 58.38969 42 AATCCTG 3025 0.0 57.1347 43 TGTGTTA 3810 0.0 54.388477 42 CTATGCG 315 0.0 53.51196 44 TAATCCC 10330 0.0 52.706745 42 >>END_MODULE