FastQCFastQC Report
Tue 24 May 2016
ERR841198.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841198.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11744542
Sequences flagged as poor quality0
Sequence length24-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTG372710.31734741124856125Illumina Single End Adapter 1 (100% over 31bp)
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG304770.2594992635728154Illumina Single End Adapter 1 (100% over 32bp)
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG239490.20391599774601685No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC237410.202144962315261No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA218270.18584803051494048Illumina Single End Adapter 1 (100% over 31bp)
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT212090.18058601178317554No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA173430.14766859363268486Illumina Single End Adapter 1 (100% over 32bp)
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG163390.1391199418419211No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA163290.13903479590775017Illumina Single End Adapter 1 (100% over 31bp)
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA162030.13796195713719617Illumina Single End Adapter 1 (100% over 31bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC161560.13756177124659266No Hit
AAGCAGTGGTATCAACGCAGAGTGCAG143580.1222525322826552No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA142170.12105197461084476Illumina Single End Adapter 1 (100% over 32bp)
AGAGCAGTTTACAGCAATGTTCAGGCGCAAGGCCTTCCTCCACTGGTACA133350.11354210321696666No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC133060.1132951800078709No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA127980.10896976655198644Illumina Single End Adapter 1 (100% over 32bp)
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA124920.10636430096635527No Hit
AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG123560.1052063162616303Illumina Single End Adapter 2 (100% over 34bp)
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGC122370.10419307964499595No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTAGTC29750.059.74435844
TCGTGCG63100.052.1120243
TATTAGT33400.043.6100443
TAAGCCA30650.043.33144844
TTAAGCC25450.042.8070143
TACGCTA12600.039.0382642
CGTGCGC38900.038.83767744
CTATACG13550.036.4369644
CATATTA38900.035.9254541
ATTAAGC29700.035.5166842
CCTTAGC60200.035.4647943
ATATTAG42900.034.79500642
CGCGACC34700.034.739891
CTCGTGC78100.034.730642
CAACTCG91650.034.298022
AAGCAGT374150.033.659261
GACAACC59050.033.62066738
ACCTTAG46800.033.41425342
AACCTTA61000.033.4101841
TAAGCAT41600.033.15002437