FastQCFastQC Report
Tue 24 May 2016
ERR841193.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841193.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences734949
Sequences flagged as poor quality0
Sequence length24-50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTGCAG228313.1064740546622964No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGC110841.5081318567682929No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGA107031.4562915249901693No Hit
AAGCAGTGGTATCAACGCAGAGTG87371.1887899704605354No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCT84821.154093685412185No Hit
AAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCT69900.9510864019136022Illumina Single End Adapter 2 (100% over 32bp)
AAGCAGTGGTATCAACGCAGAGTGCAGT68610.933534163595025No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCGTATGCCGTC64230.8739381916296233Illumina Single End Adapter 2 (100% over 25bp)
AAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCGTATGCCG55250.7517528427142564Illumina Single End Adapter 2 (100% over 23bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTG54640.7434529470752392No Hit
AAGCAGTGGTATCAACGCAGAGCG53610.7294383691929645No Hit
AAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCGTCTTCTG53300.7252203894419885Illumina Single End Adapter 2 (100% over 30bp)
AAGCAGTGGTATCAACGCAGAGTGCA47390.6448066464475767No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGG46480.6324248349205184No Hit
AAGCAGTGGTATCAACGCAGAGTGC34610.47091702961702103No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTG32240.4386698941014955No Hit
AAGCAGTGGTATCAACGCAGAGATCGGAAGAGCTCGTATGCCGTCTTCTG29910.40696701403770874Illumina Single End Adapter 2 (100% over 30bp)
AAGCAGTGGTATCAAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG23680.3221992274293863Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGAGC23580.3208385888000392No Hit
AAGCAGTGGTATCAACGCAGAGATCGGAAGAGCTCGTATGCCGTCTTC22420.3050551806996132Illumina Single End Adapter 2 (100% over 28bp)
AAGCAGTGGTATCAACGCAGAGTGCAGGATCGGAAGAGCTCGTATGCCGT21270.28940783646212187Illumina Single End Adapter 2 (95% over 24bp)
AAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG17460.23756750468399848Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAA17460.23756750468399848Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCG17020.23158069471487136No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGGATCGGAAGAGCTCGTATGCC16900.22994792835965486Illumina Single End Adapter 2 (95% over 22bp)
AAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG16880.22967580063378545Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGTGCAGAGC15740.21416452025922886No Hit
AAGCAGTGGTATCAACGCAGAGTC15600.21225962617814298No Hit
AAGCAGTGGTATCAACGCAGATCG14660.1994696230622805No Hit
AAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGC13830.1881763224386998Illumina Single End Adapter 2 (96% over 31bp)
AAGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG13630.1854550451800057Illumina Single End Adapter 2 (97% over 34bp)
AAGCAGTGGTATCAACGCAGAGTGCAGGA13410.18246164019544214No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCG13310.18110100156609507No Hit
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG13010.17701908567805386No Hit
AAGCAGTGGTATCAACGATCGGAAGAGCTCGTATGCCGTCTTCTGCTT12750.17348142524175147Illumina Single End Adapter 2 (96% over 33bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTGCG12260.1668142959579508No Hit
AAGCAGTGGTATCAACGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGA12180.16572578505447316Illumina Single End Adapter 2 (97% over 34bp)
AAGCAGTGGTATCAACGCAGAGGATCGGAAGAGCTCGTATGCCGTCTTCT11970.16286844393284433Illumina Single End Adapter 2 (96% over 29bp)
AAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCCGTCTTCT11860.16137174144056254Illumina Single End Adapter 2 (96% over 29bp)
AAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCG11700.1591947196336072Illumina Single End Adapter 2 (100% over 23bp)
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG11650.15851440031893368Illumina Single End Adapter 1 (100% over 32bp)
AAGCAGTGGTATCAACGCAGAGCGCA11270.15334397352741483No Hit
AAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA11170.15198333489806776Illumina Single End Adapter 2 (100% over 34bp)
AAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA11070.15062269626872068Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGTCGATCGGAAGAGCTCGTATGCCGTCTT10950.1489899299135042Illumina Single End Adapter 2 (96% over 27bp)
AAGCAGTGGTATCAACGCAGAGTGA10440.14205067290383414No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGAGCGG10160.13824088474166235No Hit
AAGCAGTGGTATCAACGCAGAGGA10060.13688024611231528No Hit
AAGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG9850.13402290499068642Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTGC9670.1315737554578617No Hit
AAGCAGTGGTATCAACGCAGAGGATCGGAAGAGCTCGTATGCCGTCTT9290.12640332866634282Illumina Single End Adapter 2 (96% over 27bp)
AAGCAGTGGTATCAACGCAGAGTCGATCGGAAGAGCTCGTATGCCGTC9120.12409024299645281Illumina Single End Adapter 2 (96% over 25bp)
AAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA8990.12232141277830162Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA8900.12109683801188925Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA8750.11905588006786866Illumina Single End Adapter 2 (97% over 34bp)
AAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA8590.11687885826091335Illumina Single End Adapter 2 (100% over 34bp)
AAGCAGTGGTATCAACGCAGATCGGA8460.11511002804276216No Hit
AAGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTCTTCTGCT8420.11456577259102332Illumina Single End Adapter 2 (100% over 32bp)
AAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA8260.11238875078406801Illumina Single End Adapter 2 (100% over 34bp)
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGGA8200.11157236760645976No Hit
AAGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA8130.11061992056591682Illumina Single End Adapter 2 (97% over 34bp)
AAGCAGATCGGAAGAGCTCGTATGCCG7980.1085789626218962Illumina Single End Adapter 2 (100% over 23bp)
AAGCAGTGGTATCAACGCAGATCGGAAG7950.1081707710330921No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGAGCT7940.10803470717015738No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCC7860.10694619626667973No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGATCGG7800.10612981308907149No Hit
AAGCAGTGGTATCAACGCAGATCGGAAGAGCTCG7530.10245608878983439No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCGA7510.10218396106396498No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGACA500.0102.7315143
ACATTGG602.0190782E-10100.92966544
AATCCCG900.082.43886643
CTATCAT951.8189894E-1281.95792444
ACACATG1300.079.0242343
CGCTACC551.4159832E-678.6464944
TCGTGCG1200.076.0974143
TTCAGGA2750.072.35477444
CGTGCGC1600.070.290344
GTTCAGG4550.070.2437643
ACCACTC508.364027E-569.20891644
TCCGCAC351.1228357E-465.2263643
AGATACC351.1228357E-465.2263643
ACGGATT400.003000979564.88335444
CCTATCA801.0913936E-1164.20718443
TACACAT1550.063.5911142
TCGCAAA305.2110518E-663.1834742
CAATGAA651.0333679E-861.46329543
AAGTCGA150.00399239860.39210538
TTACACA1500.060.34152241