Basic Statistics
Measure | Value |
---|---|
Filename | ERR841185.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41827 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 278 | 0.6646424558299663 | No Hit |
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA | 101 | 0.2414708202835489 | No Hit |
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG | 98 | 0.23429841968106727 | No Hit |
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG | 92 | 0.21995361847610395 | No Hit |
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG | 90 | 0.21517201807444952 | No Hit |
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT | 75 | 0.17931001506204125 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 71 | 0.1697468142587324 | No Hit |
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGGA | 63 | 0.15062041265211465 | No Hit |
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTG | 62 | 0.14822961245128746 | Illumina Single End Adapter 1 (100% over 31bp) |
AAGAAGGAGATGATCAAGAAGGTGAAAAGAAGAGAAAAGGTGGGAGGAAC | 54 | 0.1291032108446697 | No Hit |
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA | 51 | 0.12193081024218805 | No Hit |
CCTTTCGTTGCCTGATCGCCGCCATCATGGGTCGCATGCATGCTCCCGG | 49 | 0.11714920984053363 | No Hit |
TTGAGTTCCAGCCAGGAGGACCAGGGGCTGGG | 47 | 0.1123676094388792 | No Hit |
CTGCCAGCGGCGTGAGCTTCGGCCGCCATTTTACAACAGCTCCACTCGC | 46 | 0.10997680923805198 | No Hit |
ATCTACCTGAGGAAAGGCACTTGCTGCTGAGGCAGG | 45 | 0.10758600903722476 | No Hit |
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG | 43 | 0.10280440863557033 | Illumina Single End Adapter 1 (100% over 32bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAACTGT | 10 | 0.009043619 | 133.12083 | 44 |
CGTGTGC | 10 | 0.009043619 | 133.12083 | 44 |
TTCAGGA | 30 | 2.3474155E-5 | 88.74722 | 44 |
GTTCAGG | 40 | 1.886292E-9 | 75.55506 | 43 |
TCGTGCG | 30 | 2.319177E-6 | 71.95721 | 43 |
TGAACAC | 20 | 0.002981621 | 64.76148 | 43 |
TGTGTTA | 25 | 4.468022E-6 | 64.543434 | 42 |
TGTGCCC | 15 | 0.003033906 | 64.543434 | 42 |
ACCTTAG | 45 | 7.403287E-10 | 57.37194 | 42 |
AGTTCAG | 45 | 7.403287E-10 | 57.37194 | 42 |
CAGTTCA | 45 | 3.274181E-11 | 57.35907 | 41 |
CCGGAAC | 15 | 0.004848096 | 57.359066 | 41 |
CTGTGTT | 25 | 9.025756E-6 | 57.359066 | 41 |
TGGACGC | 15 | 0.004848096 | 57.359066 | 41 |
AACCTTA | 40 | 7.4760464E-10 | 57.359062 | 41 |
CTATACC | 15 | 0.0054623997 | 55.66028 | 40 |
GTGGACG | 15 | 0.0054623997 | 55.66028 | 40 |
ACGCACC | 20 | 2.4236192E-4 | 55.660275 | 40 |
ACAACCT | 45 | 5.2750693E-11 | 54.613678 | 39 |
CCTATAC | 15 | 0.005889614 | 54.613674 | 39 |