FastQCFastQC Report
Tue 24 May 2016
ERR841185.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841185.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41827
Sequences flagged as poor quality0
Sequence length24-50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC2780.6646424558299663No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA1010.2414708202835489No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG980.23429841968106727No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG920.21995361847610395No Hit
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG900.21517201807444952No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT750.17931001506204125No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT710.1697468142587324No Hit
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGGA630.15062041265211465No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTG620.14822961245128746Illumina Single End Adapter 1 (100% over 31bp)
AAGAAGGAGATGATCAAGAAGGTGAAAAGAAGAGAAAAGGTGGGAGGAAC540.1291032108446697No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA510.12193081024218805No Hit
CCTTTCGTTGCCTGATCGCCGCCATCATGGGTCGCATGCATGCTCCCGG490.11714920984053363No Hit
TTGAGTTCCAGCCAGGAGGACCAGGGGCTGGG470.1123676094388792No Hit
CTGCCAGCGGCGTGAGCTTCGGCCGCCATTTTACAACAGCTCCACTCGC460.10997680923805198No Hit
ATCTACCTGAGGAAAGGCACTTGCTGCTGAGGCAGG450.10758600903722476No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG430.10280440863557033Illumina Single End Adapter 1 (100% over 32bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACTGT100.009043619133.1208344
CGTGTGC100.009043619133.1208344
TTCAGGA302.3474155E-588.7472244
GTTCAGG401.886292E-975.5550643
TCGTGCG302.319177E-671.9572143
TGAACAC200.00298162164.7614843
TGTGTTA254.468022E-664.54343442
TGTGCCC150.00303390664.54343442
ACCTTAG457.403287E-1057.3719442
AGTTCAG457.403287E-1057.3719442
CAGTTCA453.274181E-1157.3590741
CCGGAAC150.00484809657.35906641
CTGTGTT259.025756E-657.35906641
TGGACGC150.00484809657.35906641
AACCTTA407.4760464E-1057.35906241
CTATACC150.005462399755.6602840
GTGGACG150.005462399755.6602840
ACGCACC202.4236192E-455.66027540
ACAACCT455.2750693E-1154.61367839
CCTATAC150.00588961454.61367439