FastQCFastQC Report
Tue 24 May 2016
ERR841180.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841180.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1686108
Sequences flagged as poor quality0
Sequence length24-50
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG277091.6433704128086695No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT217501.2899529567501016No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCC153770.9119819133768418No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG124450.7380903239887362No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA113580.6736223302421909No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA95570.5668082946050905No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA93830.5564886709510897No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGA90870.5389334491029044No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTC82790.49101243811191214No Hit
AGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAGAT81270.48199759446014134No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATC71650.4249431234535392No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG68590.4067948197861584Illumina Single End Adapter 1 (100% over 32bp)
TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAAT52480.3112493387137716No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG51920.30792808052627707No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTG49840.29559197868701176No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG49680.294643047776299No Hit
ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTCCC48750.2891273868577814No Hit
CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCT47920.28420480775845913No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTG47490.2816545559359187Illumina Single End Adapter 1 (100% over 31bp)
CGGCAAGTTTGAATTTCGTGGAGGCTCGGGTTGTGAGGGTTCCTGCTT47020.2788670713857001No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC46970.27857053047610236No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG46590.2763168195631597No Hit
CTCTTTCCCTTCGGTGTGCCACTGAAGATCCTGGTGTCGCCATGGGCCG44430.26350625226853797No Hit
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG43880.26024430226296297No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA41380.24541725678307677Illumina Single End Adapter 1 (100% over 32bp)
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGT40660.24114706768486954No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATG37290.2211602103779829No Hit
AGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAG33770.2002837303423031No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA33470.19850448488471675Illumina Single End Adapter 1 (100% over 32bp)
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCG31500.1868207730465664No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA30930.18344020667715236Illumina Single End Adapter 1 (100% over 32bp)
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA29770.17656045757448513Illumina Single End Adapter 1 (100% over 31bp)
TCAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT29150.17288335029547336No Hit
ATTAGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATA28750.17051102301869156No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGAC26370.15639567572183988No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT26090.15473504662809262No Hit
CTTCCGCCACGGCCGTCTCTGGAGAGCAGCAGCCATGGCCCTACGCTAC25180.14933800207341405No Hit
TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTA24780.14696567479663225No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCG24660.1462539766135977No Hit
CCTTTCGTTGCCTGATCGCCGCCATCATGGGTCGCATGCATGCTCCCGG24050.14263617751650548No Hit
TCTGGAAGAGGTCTTGCGAAAGCCGCCTCGAGCGCGCTCCGCGGCTGC23420.13889976205557414No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA22520.1335620256828151Illumina Single End Adapter 1 (100% over 31bp)
CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATC22470.13326548477321737No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTG22230.13184208840714828No Hit
ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTC22170.13148623931563103No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGGTTGTGAGGG21970.13030007567724014No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTAG21940.13012215113148148No Hit
CGGCTCCTGGCCAGGTAACTTACTACTTCCAGTCAATATGCCGACCTT20530.12175969748082567No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA20240.12003976020515887Illumina Single End Adapter 1 (100% over 31bp)
TTGTCTTTCTAGGTCTCAGCCGGTCGTCGCGACGTTCGCCCGCTCGCT19890.11796397383797479No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA19730.11701504292726207No Hit
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG19090.1132193192844112No Hit
CTGTGCGTCTGCTCCTCCTTCTCGCGCTTCTCCTGCCGCCCTAATCCT19020.11280416201097439No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA18480.10960152018731897No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA18190.10788158291165216No Hit
CTTGTTTCCTGAGTTGTCCTGTGCTGGAGGTCTGCTCAGACGAAGGTCT17960.10651749472750263No Hit
CTTTCCGCGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAAC17750.10527202290719219No Hit
CTCTTTCCCTTCGGTGTGCCACTGAAGATCCTGGTGTCGCCATGGGC17690.10491617381567492No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA17660.10473824926991629No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGGTTGTGAGGGTTCCTGC17570.10420447563264039No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGG16920.10034944380786996No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGCA402.1464075E-10343.1286344
ACTTCTA4300.0274.502944
CTATCAT2450.0246.4924244
GAACACA5300.0233.068544
CCCATAC1950.0211.1560844
ACATTGG2250.0195.2020644
TCTACGT300.0035309934183.0019444
CGATAAA300.0035309934183.0019444
TAAGCCA4700.0181.0551144
CGTGCGC5500.0149.7288744
CACATGC7100.0146.9170544
TGATTAC400.008346969137.2514544
TCGTGCG33450.0104.2408143
CCAGAAT5500.099.8192444
TTTGACT1658.6693035E-999.8192444
TTAACCA856.107743E-496.8833844
TTAAAGT2351.0913936E-1193.447844
CCGTAAG252.0708534E-591.75934643
CAATGAA12450.091.20656643
ATTAGTC651.6001031E-684.4624344