FastQCFastQC Report
Tue 24 May 2016
ERR841178.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841178.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4954425
Sequences flagged as poor quality0
Sequence length24-50
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG435390.8787901724216232No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCC414080.8357781175413896No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC260230.525247632167204No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA214680.43330961716041716No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGT213750.4314325073040767No Hit
CTCTGCAGGTACCATGGAGCTGAGCTATAGGCTCTTCATCTGCCTCCT200540.404769473753261No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG193070.3896920429716869No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATC192150.3878351170922963No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA180640.3646033596229633No Hit
CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCT176390.35602516941925655No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA133240.26893130888044525No Hit
ACTACTTCTCCCCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCTTG125150.2526024715279775No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGA123360.24898953965394574No Hit
ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTCCC115620.2333671414947244No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA107060.21608965722561144No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA105910.21376849987637314No Hit
AGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAGAT105100.21213359774343138No Hit
ACCAGCGAGCGGCCTTGAGAGGCTCTGGCTCTTGCTTCTTAGGCGGCCC98440.19869106909479908No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG92800.18730730609505644Illumina Single End Adapter 1 (100% over 32bp)
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG89880.18141358482568615No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG88890.1794153711076462No Hit
CGGCTCCTGGCCAGGTAACTTACTACTTCCAGTCAATATGCCGACCTT88600.17883003577609916No Hit
CTCTGCAGGTACCATGGAGCTGAGCTATAGGCTCTTCATCTGCCTC82950.1674260887994066No Hit
AGCGAGCGGCCTTGAGAGGCTCTGGCTCTTGCTTCTTAGGCGGCCCGAG81370.16423702044132266No Hit
CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATC81240.163974628740974No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTC79630.16072500845204035No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGT78340.15812127542550344No Hit
TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAAT74500.1503706282767425No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCCG74000.1493614294292476No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTG71470.1442548832609233Illumina Single End Adapter 1 (100% over 31bp)
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGT69350.1399758801475449No Hit
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG65550.1323059689065835No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTAG65460.13212431311403441No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTG64960.13111511426653952No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTG64040.12925818838714886No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGC62680.12651316752196268No Hit
CTGCGCGTCTGCTCCCCCTTCTCACGTTTCTCCTGCTGCCCTAATCCT61430.1239901704032254No Hit
CGGCACAGCTGGTTTGAGCAACTGAACTGGAAACAAGATGCAGGACCC60760.1226378439475822No Hit
ATTCCTGCTCACCGCAGTGTAGACAGGGAAACTTTCTTTGCAGTTCAGG56940.11492756475272106No Hit
CTCTGCAGGTACCATGGAGCTGAGCTATAGGCTCTTCATCTGCCTCCTG56280.11359542227402776No Hit
CAGGTACCATGGAGCTGAGCTATAGGCTCTTCATCTGCCTCCTGCTCT55120.11125408094783955No Hit
ACCACGCTTTTCATCTGTCCCGCTGCGTGTTTTCCTCTTGATCGGGAAC55080.11117334504003996No Hit
ACTACTTCTCCCCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCT54670.11034580198509412No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA53380.10774206895855724Illumina Single End Adapter 1 (100% over 32bp)
ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTC53220.10741912532735887No Hit
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGC52460.1058851430791666No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG51590.10412913708452544No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGGTTGTGAGGGTTCCTGCTT51240.103422697891279No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATG51090.10311993823703053No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCA16300.0261.340844
CTATCAT10950.0163.529444
ACTTCTA11500.0145.8742244
ACATTGG7850.0144.0681344
CCCATAC4950.0106.62012544
GAACACA21500.097.31344
TCGTGCG54900.095.070343
TTAAGCC14750.084.1993143
CGTGCGC16800.083.0249844
CAATGAA23500.082.4618843
AATGAAG13450.075.6759444
AATCGCA1251.8261908E-675.3956644
ATCCTTG20200.071.5525243
CCAGAAT13500.069.810844
AGGTCCC21300.065.5954143
TGGTACA6400.064.7931544
ATAAGAT20750.064.75423443
TCCAGAA43850.064.3359343
GTAGAGA5600.063.9516844
AATCCCG15150.059.00874343