FastQCFastQC Report
Tue 24 May 2016
ERR841170.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841170.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4486055
Sequences flagged as poor quality0
Sequence length24-50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA1388883.0959941418462327No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCCG231760.5166231800546359No Hit
CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCC207860.46334697189401375No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC189560.4225538920053365No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTCTACCGGGAAGCAGTGGT184180.41056117234407513No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAAG182970.4078639249853156No Hit
CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCTG169600.37806045623604706No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA163720.3649531715505049No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA163550.3645742194422494Illumina Single End Adapter 1 (100% over 32bp)
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA161970.3610521939655221Illumina Single End Adapter 1 (100% over 32bp)
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGAC147970.3298443732856597No Hit
CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCT146700.32701337812398645No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG146590.32676817381864465No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGC146000.3254529870899933No Hit
TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATC138240.30815493791315535No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA138120.3078874423073279No Hit
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGC107940.2406122974417389No Hit
ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTCCC105830.23590883303927393No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAAT101110.22538733921006318No Hit
AAGCAGTGGTATCAACGCAGAGTGCAG91270.20345269953221706No Hit
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCC88650.1976123788049857No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTAG88060.1962971920763343No Hit
CAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC85880.19143768857047005No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCG84860.1891639759209372No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGT83700.18657818506460577No Hit
ATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGC83130.18530758093692565No Hit
CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGA82700.18434905501604418No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTG82210.18325678129224898No Hit
TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAAT81480.18162951635679903No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA75190.16760828835134656Illumina Single End Adapter 1 (100% over 32bp)
TCGCTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATC71240.15880322465952826No Hit
ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTCCCA68410.15249478662209892No Hit
ACTACTTCTCCCCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCTTGT67330.1500873261696524No Hit
CTCTGCAGGTACCATGGAGCTGAGCTATAGGCTCTTCATCTGCCTCCTG66000.14712258320506547No Hit
TACCTGGTTGATCCTGCCAGTAGCATATG64650.1441132576395073No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTCTACC62320.1389193846263588No Hit
AGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCT61300.13664567197682595No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA60860.13566485475545886Illumina Single End Adapter 1 (100% over 31bp)
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTCTACCGGGAAGCAGTGG59800.13330197690398357No Hit
AAGCAGTGGTATCAACGCAGAGTG58390.1301589035355117No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA57480.12813039519132066Illumina Single End Adapter 1 (100% over 32bp)
TCGCTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAAT56580.12612417814761523No Hit
AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTCTAC55790.12436316540925156No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA55560.1238504654980824No Hit
ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA55140.1229142308776865Illumina Single End Adapter 1 (100% over 32bp)
AGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAGATG54620.12175508325243448No Hit
ACTACTTCTCCCCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCTTG50880.11341813687081412No Hit
CCCTTCCACCTTCTGCCGTGTTAGGATTTGGTGTTCCTCCCTTCCAGAA47340.10552701649890604No Hit
TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA46840.10441245147462526Illumina Single End Adapter 1 (100% over 31bp)
AGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAGAT46420.10347621685422939No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGCCA162600.091.22546444
ATTAGTC23350.085.21744544
AATGAAG34850.058.6400844
TTAAGCC162050.056.50041643
TATTAGT23350.052.74289743
CTATACG2050.052.46743444
AATCCCG31350.050.72566643
CCAGAAT23900.049.70835544
CAATGAA48200.048.8069243
ATTAAGC162450.048.0771842
AGATTAA165450.045.3559240
GATTAAG168950.045.26894441
AATCCTG36950.044.9794443
AAGATTA166400.044.79922539
TAATCCT57200.044.2403142
AAAGATT170300.043.52776738
CTAATCC111500.043.2122241
CAAAGAT170650.043.06035237
CGCTACC6600.042.9640444
CTCAAAG167300.042.95235435