##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR841145.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4025528 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.17387433400041 38.0 35.0 39.0 31.0 39.0 2 37.055628479046725 39.0 35.0 39.0 33.0 39.0 3 37.210951209381726 39.0 35.0 39.0 35.0 39.0 4 37.5870188954095 39.0 35.0 39.0 34.0 41.0 5 38.215356842630335 40.0 35.0 41.0 35.0 41.0 6 38.18702043558013 40.0 35.0 41.0 35.0 41.0 7 38.12308000341819 40.0 35.0 41.0 34.0 41.0 8 38.09760856215632 40.0 35.0 41.0 34.0 41.0 9 38.115692401096204 40.0 35.0 41.0 34.0 41.0 10 38.015946479567404 40.0 35.0 41.0 34.0 41.0 11 38.07559629444883 40.0 35.0 41.0 34.0 41.0 12 38.045481735563634 40.0 35.0 41.0 34.0 41.0 13 38.003633063786914 40.0 35.0 41.0 34.0 41.0 14 37.96406036673947 40.0 35.0 41.0 34.0 41.0 15 37.91943864258303 39.0 35.0 41.0 34.0 41.0 16 37.84338377474955 39.0 35.0 41.0 34.0 41.0 17 37.74929475089976 39.0 35.0 41.0 34.0 41.0 18 37.688494776337414 39.0 35.0 41.0 34.0 41.0 19 37.55260502473216 39.0 35.0 41.0 34.0 41.0 20 37.46641956036574 39.0 35.0 40.0 33.0 41.0 21 37.08728445063604 38.0 35.0 40.0 33.0 41.0 22 36.95154151206997 38.0 35.0 40.0 33.0 41.0 23 36.81149628073634 38.0 35.0 40.0 33.0 41.0 24 36.68401039565493 37.0 35.0 40.0 33.0 41.0 25 36.582018312853116 37.0 35.0 40.0 33.0 41.0 26 36.42898069141621 37.0 35.0 40.0 32.0 41.0 27 36.36363847999306 36.0 35.0 40.0 32.0 41.0 28 36.43909786665073 36.0 35.0 40.0 33.0 41.0 29 36.46582300771787 36.0 35.0 40.0 33.0 41.0 30 36.45747038440381 36.0 35.0 40.0 33.0 41.0 31 36.39622085528012 36.0 35.0 40.0 33.0 41.0 32 36.328323568560485 35.0 35.0 39.0 33.0 41.0 33 36.26598084590898 35.0 35.0 39.0 33.0 41.0 34 36.19796228819215 35.0 35.0 39.0 33.0 41.0 35 36.041001243343935 35.0 35.0 39.0 33.0 41.0 36 35.943467831757935 35.0 35.0 39.0 33.0 41.0 37 35.911266546125354 35.0 35.0 39.0 33.0 41.0 38 35.81412802044299 35.0 35.0 38.0 33.0 41.0 39 35.670212521892886 35.0 35.0 37.0 33.0 41.0 40 35.52148425796807 35.0 35.0 37.0 33.0 41.0 41 35.37957923837882 35.0 35.0 37.0 32.0 41.0 42 35.31015704023727 35.0 35.0 37.0 33.0 41.0 43 35.28942208566635 35.0 35.0 36.0 33.0 41.0 44 35.25208503393428 35.0 35.0 36.0 33.0 41.0 45 35.19707710463277 35.0 35.0 36.0 33.0 40.0 46 35.10989579332922 35.0 35.0 36.0 33.0 40.0 47 35.05884958073333 35.0 35.0 36.0 33.0 40.0 48 35.000409357683445 35.0 35.0 36.0 33.0 39.0 49 35.053848728259446 35.0 34.0 36.0 32.0 40.0 50 35.651772421317105 35.0 35.0 39.0 32.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 41.0 14 192.0 15 573.0 16 82.0 17 0.0 18 0.0 19 2.0 20 5.0 21 25.0 22 105.0 23 270.0 24 713.0 25 1705.0 26 3762.0 27 7728.0 28 14781.0 29 26678.0 30 45670.0 31 75299.0 32 124646.0 33 233748.0 34 646213.0 35 310978.0 36 467102.0 37 607011.0 38 603333.0 39 486681.0 40 368185.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 46.97681894151525 19.883851261250697 33.139329797234055 2 29.550732226927746 22.05042419280154 27.25719458416387 21.141648996106845 3 33.61718015624286 14.243994825026679 22.169489319165088 29.969335699565374 4 23.223040555176862 16.696194884248726 27.010841807583997 33.069922752990415 5 27.064399999205076 20.51306064695116 28.556676291905063 23.865863061938708 6 29.902238911268284 23.044157188820943 21.743955078687815 25.309648821222957 7 35.20348138182122 20.40480155646663 21.686124155638716 22.705592906073438 8 30.77397548843282 17.573346900083667 26.93052936161418 24.72214824986933 9 27.08183870538225 20.165603120882526 25.40993380247262 27.342624371262602 10 31.586340971917227 18.985733051664276 23.984605249298973 25.443320727119524 11 31.590216239956597 21.008697492602213 24.35792273709188 23.04316353034931 12 27.81202863326252 16.224082902913604 26.750677178248417 29.213211285575458 13 25.074946690222998 16.776308598524217 28.192078157200744 29.956666554052042 14 25.516081368704924 20.190966253370988 21.36924646903462 32.92370590888947 15 23.697661524152856 21.24747362333587 26.010650031498972 29.0442148210123 16 29.03132210234285 21.408520820125958 25.800218008668672 23.759939068862522 17 29.844482512604557 19.138657090448756 19.825150887038916 31.191709509907767 18 27.829144400436416 19.287333239267 19.578922317768004 33.304600042528584 19 27.12528642205445 21.310869033826123 26.344171497502938 25.219673046616492 20 33.704994723673515 17.07877823728962 22.405011218404145 26.81121582063272 21 28.04702886180397 19.5387536740522 24.367213443801656 28.047004020342175 22 28.69486934384756 21.026806918247743 26.12141810962438 24.156905628280313 23 30.073346900083664 18.375974530546056 22.89192871096661 28.65874985840367 24 31.052398592184677 19.801129193487167 21.458178902245866 27.68829331208229 25 26.811846493952157 20.697173092327823 25.772335269925257 26.71864514379476 26 29.571676153731918 18.982246837582096 25.35635859523589 26.089718413450097 27 28.749541676503696 21.261604852143385 24.979180916130787 25.009672555222128 28 28.79681604823336 17.430950714062345 26.872520073503438 26.89971316420086 29 33.79159639378251 18.358439402150275 25.178324540706214 22.671639663361002 30 26.332430801023076 19.61156758218152 23.176226683280756 30.879774933514643 31 26.775192752189657 18.511334987537012 32.213577787677785 22.499894472595543 32 28.56859965674034 18.49220236488777 25.130140688912896 27.809057289458988 33 28.490542463848417 20.883445780776377 22.9144801886075 27.711531566767704 34 24.22770334877294 21.31053704892097 30.010118680908338 24.45164092139775 35 27.365236674692017 22.025777419468216 22.435273623534787 28.173712282304976 36 25.84340700887175 21.206848590752493 26.123346826226474 26.82639757414928 37 24.592895789252157 21.478277192709072 23.34013307605776 30.58869394198101 38 29.455501517183606 24.896598701593824 20.967377210610035 24.68052257061253 39 26.363318430314862 26.20664088948078 21.10527611618759 26.324764564016768 40 26.96545071495103 25.964865295962912 19.830062516896554 27.2396214721895 41 27.883422404464593 23.302520225438556 21.12881835068264 27.685239019414208 42 27.678598981638636 24.28240383571351 23.75950784915451 24.279489333493345 43 24.028362937016492 24.80157206097656 25.2616106983312 25.90845430367575 44 25.262903188189473 24.28825477528745 24.476059425799377 25.972782610723698 45 25.757405679117408 23.784947917523738 27.150914587559917 23.30673181579894 46 26.42304426774344 24.59839699838288 22.75367291519192 26.22488581868176 47 32.03258263083731 19.71340212277305 20.75238876786187 27.50162647852777 48 24.071712911374537 23.258701450619927 22.57353942186972 30.096046216135814 49 27.861685978740176 22.32273768602739 19.94659344910507 29.86898288612736 50 25.02459677357656 29.223415210369357 22.123172073366476 23.628815942687606 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 9134.0 1 8943.0 2 6673.5 3 4426.5 4 4094.5 5 2975.0 6 1666.0 7 1390.0 8 1517.0 9 1531.5 10 1509.0 11 1496.5 12 1459.0 13 1481.0 14 1550.5 15 1842.0 16 2182.5 17 2680.0 18 3195.5 19 4199.0 20 5249.0 21 6433.5 22 7861.0 23 9954.5 24 12141.0 25 14036.0 26 16087.5 27 18257.0 28 20549.5 29 22963.0 30 25621.0 31 29272.5 32 33606.0 33 38403.0 34 43081.0 35 47751.0 36 55365.5 37 64677.5 38 84004.0 39 117950.0 40 149820.5 41 173888.0 42 202518.5 43 265750.5 44 291052.5 45 226852.0 46 184347.5 47 179079.5 48 188086.0 49 217596.0 50 254345.0 51 287064.5 52 303440.5 53 308633.0 54 300364.5 55 280797.0 56 265555.5 57 276510.5 58 314026.5 59 320823.0 60 281643.0 61 252695.5 62 242204.5 63 233102.0 64 248913.5 65 272850.5 66 241293.5 67 192346.5 68 161315.0 69 140590.5 70 126356.5 71 116846.5 72 114845.5 73 100494.5 74 78052.5 75 66950.5 76 62776.0 77 48448.0 78 36062.5 79 33378.5 80 30184.0 81 21115.5 82 13605.5 83 11913.0 84 10254.5 85 8142.0 86 6080.5 87 3599.5 88 1669.5 89 1150.5 90 796.5 91 518.0 92 378.0 93 323.5 94 216.5 95 84.5 96 37.5 97 32.0 98 24.0 99 16.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 24513.0 25 21386.0 26 27726.0 27 53854.0 28 81973.0 29 80291.0 30 16372.0 31 17842.0 32 19851.0 33 18199.0 34 21729.0 35 18156.0 36 17127.0 37 15645.0 38 16644.0 39 19501.0 40 23646.0 41 31333.0 42 36770.0 43 32810.0 44 27096.0 45 31015.0 46 55067.0 47 143718.0 48 624513.0 49 1241669.0 50 1307082.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.280505329809769 #Duplication Level Percentage of deduplicated Percentage of total 1 46.27519186033411 6.145579321391369 2 10.553416176862507 2.8030939956904635 3 6.72712184480726 2.680187325427277 4 5.642822796024402 2.9975815287109655 5 4.531596020373466 3.009094255055728 6 3.8236401671270515 3.0467924171283314 7 3.1864836825043112 2.9622679470195257 8 2.6765608956605202 2.8436864992303956 9 2.1645395360370228 2.5871560960431284 >10 13.427864643440856 30.34321847514949 >50 0.5470078740648411 4.99007906087388 >100 0.36477987175954196 9.637078460933878 >500 0.03840412230880601 3.5728247309716554 >1k 0.03269274001672549 8.437271072982249 >5k 0.004332772773300969 4.044245825626983 >10k+ 0.0035449959054280646 9.899842987764691 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA 93286 2.3173606046213067 No Hit AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA 32253 0.8012116671403104 No Hit CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCC 25470 0.6327120318129696 No Hit CTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATCCCG 21619 0.5370475624564032 No Hit CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGC 20147 0.5004809307002709 No Hit ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTCCC 19296 0.4793408467162569 No Hit CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGAC 19043 0.4730559568831716 No Hit CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG 17335 0.4306267401443985 No Hit CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCT 16523 0.41045547317022757 No Hit CTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAATCCTG 14584 0.3622878787577679 No Hit CAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGA 13481 0.3348877464024595 No Hit ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA 13328 0.3310870027484593 No Hit CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGC 13131 0.32619323477566176 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 12852 0.31926246693601434 Illumina Single End Adapter 1 (100% over 32bp) ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 12456 0.30942524806683747 Illumina Single End Adapter 1 (100% over 32bp) CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC 11475 0.2850557740500128 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 11388 0.2828945668742088 Illumina Single End Adapter 1 (100% over 31bp) AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAAG 10837 0.26920692142745 No Hit CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCG 8581 0.2131645836272906 No Hit CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTAG 8563 0.21271743731505532 No Hit ATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGC 8314 0.20653191332913345 No Hit TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAAT 8282 0.20573698655182623 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 8120 0.20171266974170843 Illumina Single End Adapter 1 (100% over 31bp) CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGT 8095 0.20109163319693715 No Hit TCGCTGCGCATCAGCTCCTCCTTCTCACGTTTCTCCTGCCGTCCTAATC 8047 0.19989924303097634 No Hit CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA 7740 0.19227291426118512 No Hit CTGCGCGTCTGCTCCTCCTTCTCACGTTTCTCCTGCCGCCCTAATCCT 7492 0.18611223173705413 No Hit CTGCGCGTCTGCTCCTCCTTCTCACGTTTCTCCTGCCGCCCTAATCCTG 7267 0.1805229028341127 No Hit ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAAT 7264 0.18044837844874015 No Hit CAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC 7182 0.17841137858189038 No Hit ATCCGAATTCAGTCTTCCTGAGGCTCTGGCTCACCTCCAGGCAGGTCCCA 7123 0.17694573233623018 No Hit AGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAGAT 6573 0.16328292835126224 No Hit ACTACTTCTCCCCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCTTG 6297 0.15642668489698744 No Hit CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCC 6112 0.15183101446568004 No Hit TCGCTGCGCGTCTGCTCCTCCTTCTCGCGCTTCTGCTGCCGCCCTAAT 6077 0.15096156330300026 No Hit AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG 5861 0.1455958075561765 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 5800 0.14408047838693458 Illumina Single End Adapter 1 (100% over 32bp) AAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAGTCGGGGAAGCAGTGGT 5511 0.1369012959293787 No Hit CTGTGCGTCTGCTCCTCCTTCTCGCGCTTCTCCTGCCGCCCTAATCCT 5314 0.1320075279565811 No Hit AAGCAGTGGTATCAACGCAGAGTGCAG 5010 0.12445572357216246 No Hit TCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 4857 0.12065497991816229 Illumina Single End Adapter 1 (100% over 31bp) AAGCAGTGGTATCAACGCAGAGTG 4765 0.118369565433404 No Hit AGCGAGCGGCCTTGAGAGGCTCTGGCTCTTGCTTCTTAGGCGGCCCGAG 4744 0.11784789473579615 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 4356 0.10820940756094603 Illumina Single End Adapter 1 (100% over 32bp) TCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGC 4322 0.1073647978600571 No Hit ACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCAT 4199 0.10430929805978248 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.29285599305233995 0.0 0.0 0.0 0.0 2 0.4462023366872619 0.0 0.0 0.0 0.0 3 0.5379915380044555 0.0 0.0 0.0 0.0 4 0.6535540182554934 0.0 0.0 0.0 0.0 5 0.8040435937844675 0.0 0.0 0.0 0.0 6 0.9462112796135066 0.0 0.0 0.0 0.0 7 1.0394412857145696 0.0 0.0 0.0 0.0 8 1.1439741569304698 0.0 0.0 0.0 0.0 9 1.218672432535558 0.0 0.0 0.0 0.0 10 1.2893463913305285 0.0 0.0 0.0 0.0 11 1.3707518616191465 0.0 0.0 0.0 0.0 12 1.4230182972270966 0.0 0.0 0.0 0.0 13 1.4817683543624587 0.0 0.0 0.0 0.0 14 1.5422821552849713 0.0 0.0 0.0 0.0 15 1.6032182610579282 0.0 0.0 0.0 0.0 16 1.6519075261679959 0.0 0.0 0.0 0.0 17 1.7321702892142348 0.0 0.0 0.0 2.484146179085079E-5 18 1.774897603494498 0.0 0.0 0.0 2.484146179085079E-5 19 1.84999334248824 0.0 0.0 0.0 2.484146179085079E-5 20 1.881790413580529 0.0 0.0 0.0 2.484146179085079E-5 21 1.9254368619470539 0.0 0.0 0.0 2.484146179085079E-5 22 1.9489368848011988 0.0 0.0 0.0 2.484146179085079E-5 23 1.9784236999469387 0.0 0.0 0.0 2.484146179085079E-5 24 2.007289478547907 0.0 0.0 0.0 2.484146179085079E-5 25 2.0335717451226274 0.0 0.0 0.0 2.484146179085079E-5 26 2.0834782418604467 0.0 0.0 0.0 2.484146179085079E-5 27 2.1046183258444606 0.0 0.0 0.0 2.484146179085079E-5 28 2.1264042878350367 0.0 0.0 0.0 2.484146179085079E-5 29 2.152140042250358 0.0 0.0 0.0 2.484146179085079E-5 30 2.169504224042163 0.0 0.0 0.0 2.484146179085079E-5 31 2.1845084669638366 0.0 0.0 0.0 2.484146179085079E-5 32 2.1972272954007526 0.0 0.0 0.0 2.484146179085079E-5 33 2.2115359773922822 0.0 0.0 0.0 2.484146179085079E-5 34 2.226465695928584 0.0 0.0 0.0 2.484146179085079E-5 35 2.2406998535347413 0.0 0.0 0.0 2.484146179085079E-5 36 2.2531454258919577 0.0 0.0 0.0 2.484146179085079E-5 37 2.266236876255736 0.0 0.0 0.0 2.484146179085079E-5 38 2.2761237780484946 0.0 0.0 0.0 2.484146179085079E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGCCA 11100 0.0 111.12289 44 ATTAGTC 1400 0.0 108.22998 44 CTATACG 410 0.0 99.26354 44 CGACGGG 3865 0.0 64.63737 44 TTAAGCC 10880 0.0 58.316273 43 AATGAAG 2445 0.0 58.130928 44 CTATGCG 155 0.0 56.553123 44 CAATGAA 5540 0.0 53.847504 43 CCAGAAT 2080 0.0 52.67869 44 AATCCCG 2835 0.0 52.612907 43 GGTCCCA 1905 0.0 51.930485 44 TATTAGT 1515 0.0 51.450077 43 AATCCTG 3605 0.0 50.717983 43 AGGTCCC 3715 0.0 50.07968 43 TTTGGAC 2920 0.0 49.213875 43 ATCCTTG 1580 0.0 47.100258 43 ATTAAGC 10890 0.0 47.03675 42 TAATCCT 6975 0.0 46.065 42 TAATCCC 5895 0.0 44.67 42 CTAATCC 12740 0.0 44.13999 41 >>END_MODULE