FastQCFastQC Report
Tue 24 May 2016
ERR841126.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841126.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2400952
Sequences flagged as poor quality0
Sequence length24-50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC137750.5737307534677911No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA79850.33257641135682847No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAA74840.31170968849023223No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAA72080.30021424834815524No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAA68730.2862614496249821No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT65780.2739746567195013No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA63370.2639369716679051No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA50520.21041653477453945No Hit
AAAAAAAAAAAAAAAAAAAAAAAA49830.2075426747390202No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAA48940.2038358117946548No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT41570.17313965460367386No Hit
CTCTTTTCCTCCTTGGCTGTCTGAAGATAGATCGCCATCATGAACGACA36740.15302263435503916No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC35310.14706666355678913No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAAG32380.13486317094219294No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA32220.134196768615116No Hit
CTTTTCGATCCGCCATCTGCGGTGGAGCCGCCACCAAAATGCAGATTTTC32220.134196768615116No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACC31320.13044825552530828No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTT30410.12665809229005828No Hit
AGCCTGTATTTTTTTTAACAACATCCCCATTCCCCACCTGGTCCTCCCCC30180.1257001389448852No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGG29790.1240757832726352No Hit
ATAGGTGTATGAACATGAGGGTGTTTTCTCGTGTGAATGAGGGTTTTATG29380.12236812730950057No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT29140.12136852381888519No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28990.12074377163725056No Hit
ATACTTCTTGCTTCTCATGATGCATGTTTCTGTATGTTAATGACTTGTTG28720.11961921771030824No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCA26580.11070608658565435No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAG26500.11037288542211589No Hit
CTCTTCCGGGGACGTTGTCTGCAGGCACTCAGAATGGTCCAGCGTTTGAC26000.1082903781500005No Hit
CTCTTTCCGCCATCTTTCCGCGCCGCCACAATGGTGCGCATGAATGTCC25390.10574971927801971No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTT24930.10383381258767356No Hit
ACTTTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCT24920.10379216244223124No Hit
CCTTTCGGCCGGAACCGCCATCTTCCAGTAATTCGCCAAAATGACGAAC24780.10320906040603894No Hit
AAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCCGTGTCTGTGTAGA24750.10308410996971201No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA24720.10295915953338508No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA24350.10141810415201971No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAAAC251.1024895E-8177.6556744
TAGTTAC450.0177.6556744
TGTATGG2000.0173.2142844
TCATTAC1650.0166.8886644
GCATATA1450.0165.4035344
CGCCCCA650.0163.9898544
CGACGGG600.0162.8510344
TGACGGC1100.0161.5051444
TCATCGC1050.0160.7360744
GTACAAT1000.0159.890144
CGTCAGT900.0157.9161444
AGACGCG1300.0157.1569444
AGCGCCT850.0156.75544
GTGCCCC1000.0151.0073244
CGACATA303.276E-8148.0463944
GACCGAA950.0140.2544744
GACGGCA1400.0139.586644
AGCTCGG201.7221535E-4133.2417644
CCTTGCG401.1714292E-9133.2417644
TGAGTAA1200.0133.2417444