FastQCFastQC Report
Tue 24 May 2016
ERR841107.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841107.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7184162
Sequences flagged as poor quality0
Sequence length24-50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA255400.3555042327831694No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT142490.19833906863458814No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTT134360.18702250867950918No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT132450.18436388266300233No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT130480.18162173959885647No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTT114220.15898861968869857No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111080.15461789419559302No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC109990.15310066783015194No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTT84880.11814878339324753No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT78450.10919853978793909No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATTCGT252.4900146E-8155.0329944
TCCACGA1450.0117.6112444
TAGCGTG1200.096.8433943
TTAACGG1000.096.0012743
AATCGCA2300.090.9976344
CGATACA1000.090.9485743
CCCAACG1850.090.1292243
CGATGAC405.838956E-1088.4222243
GACGTTC1850.087.991744
ACGTTTG1150.087.87302443
GACCGCC1050.086.6176943
GCGCGAC1000.085.89587443
GCCCGCA1700.082.07629444
AATACCG1750.080.8431843
CCGTGAC2400.080.7463544
CCACTCG1350.074.8547943
CATGCCG1100.073.493843
CCGCAAC3800.071.3967744
GACGATG800.069.474643
ACGGTTT1650.067.6163442