Basic Statistics
Measure | Value |
---|---|
Filename | ERR841107.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7184162 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 25540 | 0.3555042327831694 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14249 | 0.19833906863458814 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13436 | 0.18702250867950918 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 13245 | 0.18436388266300233 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13048 | 0.18162173959885647 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTT | 11422 | 0.15898861968869857 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11108 | 0.15461789419559302 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 10999 | 0.15310066783015194 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTT | 8488 | 0.11814878339324753 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7845 | 0.10919853978793909 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATTCGT | 25 | 2.4900146E-8 | 155.03299 | 44 |
TCCACGA | 145 | 0.0 | 117.61124 | 44 |
TAGCGTG | 120 | 0.0 | 96.84339 | 43 |
TTAACGG | 100 | 0.0 | 96.00127 | 43 |
AATCGCA | 230 | 0.0 | 90.99763 | 44 |
CGATACA | 100 | 0.0 | 90.94857 | 43 |
CCCAACG | 185 | 0.0 | 90.12922 | 43 |
CGATGAC | 40 | 5.838956E-10 | 88.42222 | 43 |
GACGTTC | 185 | 0.0 | 87.9917 | 44 |
ACGTTTG | 115 | 0.0 | 87.873024 | 43 |
GACCGCC | 105 | 0.0 | 86.61769 | 43 |
GCGCGAC | 100 | 0.0 | 85.895874 | 43 |
GCCCGCA | 170 | 0.0 | 82.076294 | 44 |
AATACCG | 175 | 0.0 | 80.84318 | 43 |
CCGTGAC | 240 | 0.0 | 80.74635 | 44 |
CCACTCG | 135 | 0.0 | 74.85479 | 43 |
CATGCCG | 110 | 0.0 | 73.4938 | 43 |
CCGCAAC | 380 | 0.0 | 71.39677 | 44 |
GACGATG | 80 | 0.0 | 69.4746 | 43 |
ACGGTTT | 165 | 0.0 | 67.61634 | 42 |