Basic Statistics
Measure | Value |
---|---|
Filename | ERR841101.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10246214 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 32623 | 0.3183907734115255 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAA | 23816 | 0.23243707383039236 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAA | 22804 | 0.22256025493904383 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAA | 21856 | 0.2133080570052509 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 21350 | 0.20836964755957663 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAA | 18522 | 0.1807692089975868 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 17990 | 0.17557704728790557 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 16984 | 0.16575878661132787 | No Hit |
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA | 15087 | 0.14724463104128024 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC | 14373 | 0.1402762034835501 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAA | 14262 | 0.13919287651028955 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG | 14028 | 0.13690910613422674 | No Hit |
CTAGGCAGGTGCTGGGGGCTTCCGAGACAATC | 12163 | 0.11870726104295695 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12109 | 0.11818023711001938 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 11783 | 0.11499857410747032 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGTCGT | 90 | 0.0 | 148.11832 | 44 |
TTACGTA | 15 | 1.1302576E-4 | 148.11832 | 44 |
CACGCGC | 85 | 0.0 | 130.69263 | 44 |
TGCGCCC | 75 | 0.0 | 128.3692 | 44 |
CGGATCT | 85 | 0.0 | 104.55411 | 44 |
GTCCGTA | 80 | 0.0 | 92.573944 | 44 |
CGCTTTA | 205 | 0.0 | 87.41906 | 43 |
GCCCGCA | 50 | 3.274181E-11 | 81.92415 | 43 |
AACGACA | 2345 | 0.0 | 81.44378 | 43 |
CACGTTA | 55 | 3.794048E-8 | 80.79181 | 44 |
CCCGTCG | 90 | 0.0 | 79.648476 | 43 |
CGTTTAG | 95 | 0.0 | 77.95701 | 44 |
TTAATCG | 195 | 0.0 | 76.147446 | 43 |
TGACACG | 195 | 0.0 | 75.958115 | 44 |
TCGCAAA | 465 | 0.0 | 69.371254 | 43 |
TCGGATA | 90 | 0.0 | 68.51219 | 42 |
ACGAGCG | 120 | 0.0 | 67.887566 | 44 |
CGTTATT | 70 | 9.094947E-12 | 65.8319 | 43 |
GATCTAC | 185 | 0.0 | 64.05116 | 44 |
GTCGCAA | 120 | 0.0 | 64.00324 | 43 |