Basic Statistics
Measure | Value |
---|---|
Filename | ERR841096.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5265267 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAA | 20774 | 0.39454789282290903 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAA | 19601 | 0.37226982031490524 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAA | 19109 | 0.3629255648384023 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAA | 15698 | 0.2981425253458182 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 15509 | 0.29455296379082013 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG | 13418 | 0.2548398780156828 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 13343 | 0.25341544882719147 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAA | 12530 | 0.23797463642394584 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 10312 | 0.19584951722296323 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 8748 | 0.16614542054562476 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCC | 8341 | 0.158415518149412 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 7190 | 0.13655527820336555 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGA | 6266 | 0.1190063106011528 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5848 | 0.11106749192396131 | No Hit |
TAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5559 | 0.10557869145097484 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTCGT | 10 | 0.0028831332 | 195.90079 | 44 |
AACTGCG | 80 | 0.0 | 195.90079 | 44 |
ACATCGC | 45 | 0.0 | 195.90079 | 44 |
AGCGCCT | 275 | 0.0 | 192.33896 | 44 |
GTTATAC | 115 | 0.0 | 187.38338 | 44 |
GCGCAAA | 185 | 0.0 | 169.4277 | 44 |
GCGCATC | 100 | 0.0 | 166.51567 | 44 |
CGCATTC | 55 | 0.0 | 160.28247 | 44 |
ACGACAG | 30 | 3.58535E-6 | 130.60054 | 44 |
GGTCGAG | 155 | 0.0 | 126.38761 | 44 |
AGACGAT | 80 | 0.0 | 122.437996 | 44 |
GTCATAA | 65 | 1.8189894E-12 | 120.55434 | 44 |
GCTAGTT | 175 | 0.0 | 106.34614 | 44 |
CCGTTGT | 470 | 0.0 | 104.202545 | 44 |
AACGCCA | 175 | 0.0 | 100.74898 | 44 |
ATACGAC | 75 | 0.0 | 100.1749 | 43 |
TGCGTTA | 60 | 0.0 | 98.386055 | 43 |
AATCCCG | 40 | 1.4980782E-5 | 97.95039 | 44 |
AGCGGAT | 250 | 0.0 | 97.95039 | 44 |
CCAGAAT | 2010 | 0.0 | 96.97576 | 44 |