Basic Statistics
Measure | Value |
---|---|
Filename | ERR841089.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18866042 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 207476 | 1.0997325247129206 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 110223 | 0.5842401919809147 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 91445 | 0.4847068611423636 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC | 79546 | 0.4216358682971235 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG | 60805 | 0.32229865702620614 | No Hit |
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATG | 54563 | 0.2892127559135085 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 51847 | 0.2748165195434209 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACT | 43900 | 0.23269321673300633 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCC | 37019 | 0.1962202776819854 | No Hit |
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACC | 32856 | 0.1741541760587621 | No Hit |
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAA | 31415 | 0.16651611397875613 | No Hit |
TTGAGTTCCAGCCAGGAGGACCAGGGGCTGGGTTGGG | 30155 | 0.15983744762149898 | No Hit |
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCT | 29880 | 0.15837980218638334 | No Hit |
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA | 27807 | 0.1473918058700389 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21722 | 0.11513808778757093 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21666 | 0.11484125817169283 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTA | 21583 | 0.11440131427673064 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21346 | 0.11314508893810371 | No Hit |
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCAT | 20788 | 0.11018739383703269 | No Hit |
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAA | 20115 | 0.10662013791764059 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCGTG | 70 | 0.0 | 245.35657 | 44 |
ACTTCTA | 27750 | 0.0 | 137.35547 | 44 |
CTATCAT | 31335 | 0.0 | 136.71375 | 44 |
ATCGACA | 130 | 0.0 | 132.11507 | 44 |
ACGGTTA | 85 | 0.0 | 129.89465 | 44 |
AATCGCA | 1490 | 0.0 | 117.73822 | 44 |
TAGCGTG | 335 | 0.0 | 113.523186 | 44 |
GAACACA | 13825 | 0.0 | 100.62724 | 44 |
ACCACTC | 4100 | 0.0 | 94.55204 | 44 |
CCTTAGC | 49275 | 0.0 | 90.75254 | 43 |
CCAGGCG | 1550 | 0.0 | 84.68759 | 44 |
CGCGTCA | 260 | 0.0 | 82.59513 | 43 |
CCCATAC | 12300 | 0.0 | 79.49153 | 44 |
GCGATAT | 50 | 1.4097168E-9 | 79.11745 | 43 |
CATGACC | 3785 | 0.0 | 78.76042 | 44 |
CACGCGT | 105 | 0.0 | 75.349945 | 43 |
TCCGGGC | 4155 | 0.0 | 75.213936 | 43 |
GACTCGT | 245 | 0.0 | 75.10915 | 44 |
TCGTAAC | 95 | 0.0 | 71.38416 | 43 |
TTGCGTA | 145 | 0.0 | 70.010376 | 42 |