Basic Statistics
Measure | Value |
---|---|
Filename | ERR841085.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5512743 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAA | 18749 | 0.340102921540148 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAA | 17787 | 0.32265244362017237 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAA | 17259 | 0.3130746345331172 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 15659 | 0.2840509706329499 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAA | 14082 | 0.2554445219013475 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 13808 | 0.25047421945844384 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG | 11581 | 0.21007690726739847 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAA | 11090 | 0.20117027040803462 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9068 | 0.1644916151541982 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 7926 | 0.14377597504545378 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 7823 | 0.14190757668188053 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCC | 6719 | 0.12188124859076506 | No Hit |
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACC | 6378 | 0.1156955802220419 | No Hit |
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTC | 6068 | 0.1100722453413845 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC | 5890 | 0.1068433627324909 | No Hit |
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCA | 5697 | 0.1033423832745332 | No Hit |
TCTCCCAGACAGTGGCTCAGCCTTCAGGACTCTCTTCCAGCATGGC | 5686 | 0.10314284558521955 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCACTCG | 20 | 1.1711745E-7 | 259.5476 | 44 |
TAATGTC | 50 | 0.0 | 259.5476 | 44 |
CGAATAT | 40 | 0.0 | 227.10417 | 44 |
CATAGTC | 170 | 0.0 | 190.84384 | 44 |
TTCGGCG | 115 | 0.0 | 180.55487 | 44 |
GGCATCG | 125 | 0.0 | 176.49237 | 44 |
CGTACTA | 45 | 1.891749E-10 | 173.03175 | 44 |
GCCAGCG | 510 | 0.0 | 160.30882 | 44 |
ACGAGCC | 220 | 0.0 | 147.47025 | 44 |
AGTCCCG | 45 | 3.8366124E-8 | 144.19313 | 44 |
CTATCAT | 2745 | 0.0 | 143.2476 | 44 |
ATGTTAC | 385 | 0.0 | 131.45918 | 44 |
GCGACCA | 130 | 0.0 | 129.7738 | 44 |
GCATTAG | 220 | 0.0 | 117.9762 | 44 |
ATCACTG | 245 | 0.0 | 116.53159 | 44 |
CGAGTAC | 25 | 1.7541606E-7 | 111.773315 | 43 |
ATATCGC | 75 | 0.0 | 111.773315 | 43 |
GCGTACT | 30 | 3.981768E-9 | 111.773315 | 43 |
ACGAATA | 35 | 9.094947E-11 | 111.773315 | 43 |
CTACGGG | 145 | 0.0 | 107.39902 | 44 |