FastQCFastQC Report
Tue 24 May 2016
ERR841084.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841084.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2145066
Sequences flagged as poor quality0
Sequence length24-50
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC419091.9537394187404955No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA237011.1049077277808703No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA174840.8150798157259496No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT154980.7224952518943473No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAA130670.6091654056332065No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAA125430.5847372528397727No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT125180.5835717875347426No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAA118530.5525704104209381No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA101100.4713141693542296No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA100020.46627935923649905No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA98340.45844743238669583No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC92350.4305228836781712No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC84950.39602511064927604No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA82530.38474340649658334No Hit
AAAAAAAAAAAAAAAAAAAAAAAA74810.3487538378772495No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAG71380.33276365389223456No Hit
AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCT68920.321295475290737No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA66790.3113657108918793No Hit
CTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGG56450.2631620658758285No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA55350.25803401853369545No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA51290.23910686198000433No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACT50980.23766168500176685No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG45000.20978375490544346No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC44020.20521513090972493No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACT41860.19514551067426364No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA39260.18302467150194912No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCT39130.1824186295433334No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGG37550.1750528888155423No Hit
AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTC37470.1746799399179326No Hit
ATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCC34920.16279219380662413No Hit
ACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAAT34140.15915594205492978No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC33740.1572911975668814No Hit
CTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATT31840.14843366124865157No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAA31080.14489064672135962No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAA30860.143865037252933No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAA30610.14269957194790278No Hit
CGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAGCCAAG29690.13841065962539148No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAA28780.1341683659150814No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCC27900.13006592804137496No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTA26320.12270018731358383No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCC24850.11584725132000599No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACAT23660.11029963646806205No Hit
AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGG23580.10992668757045239No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23060.10750251973598948No Hit
ATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATA22670.10568439386014229No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAA22430.10456554716731326No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTT100.0056438665156.4950344
GTATACT100.0056438665156.4950344
GTCGAAC1000.0156.4950144
GTCAATG750.0156.4950144
CAGGTCA850.0147.2894344
AATGACG850.0147.2894344
ACAGTAT750.0146.0620144
ACTACGG1300.0144.4569444
TTGCAGA1300.0144.4569444
ACTTGTA550.0142.268244
GGTAAAC1050.0141.5907344
TAACGCC1050.0141.5907344
TACTAAG1000.0140.845544
AATCTTT900.0139.1066944
AATCGCA450.0139.1066944
AAACGGA1300.0138.4379144
ACATTGG6550.0137.3811244
CCCGTAC401.8189894E-11136.9331444
TCCCGAG1550.0136.3021144
TTACTAG700.0134.1385844