Basic Statistics
Measure | Value |
---|---|
Filename | ERR841064.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7118565 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 21911 | 0.3078007997398352 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 18593 | 0.2611902820301564 | No Hit |
CAGTTGACACAAAATAAACTACGAAAGTGGCTTTAACATATCTGAATA | 16944 | 0.23802550092609956 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 12130 | 0.17039951169933829 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG | 10881 | 0.15285384062658697 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 9730 | 0.13668485151150547 | No Hit |
CAGTTGACACAAAATAAACTACGAAAGTGGCTTTAACATATCTGAA | 8965 | 0.12593830357663377 | No Hit |
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCT | 8854 | 0.12437900054294651 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CATCGTC | 10 | 0.009029244 | 133.74252 | 44 |
GCGAGCC | 255 | 0.0 | 123.25291 | 44 |
GCGAATG | 50 | 0.0 | 120.36826 | 44 |
AGCGTCA | 610 | 0.0 | 119.49126 | 44 |
GTATCGC | 80 | 0.0 | 117.024704 | 44 |
TGCACCG | 115 | 0.0 | 116.297844 | 44 |
CGTTAGA | 90 | 0.0 | 111.452095 | 44 |
CGAAGAC | 160 | 0.0 | 104.48634 | 44 |
CGTGCGC | 65 | 0.0 | 102.87885 | 44 |
TTACGAG | 150 | 0.0 | 102.53593 | 44 |
ATGCGTC | 110 | 0.0 | 94.15104 | 43 |
GAGCGTC | 590 | 0.0 | 91.11145 | 43 |
ACGGTCC | 65 | 0.0 | 91.04716 | 43 |
GCGGCAC | 105 | 0.0 | 89.24067 | 43 |
TAGCGGA | 30 | 2.3895804E-5 | 89.161674 | 44 |
ACCACGT | 60 | 1.6370905E-11 | 89.161674 | 44 |
CTATCAT | 6245 | 0.0 | 88.55489 | 44 |
CGTATCG | 45 | 1.8189894E-11 | 87.67504 | 43 |
TCGTGCG | 130 | 0.0 | 87.253525 | 43 |
AACGACA | 1060 | 0.0 | 85.141975 | 43 |