FastQCFastQC Report
Tue 24 May 2016
ERR841064.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841064.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7118565
Sequences flagged as poor quality0
Sequence length24-50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC219110.3078007997398352No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA185930.2611902820301564No Hit
CAGTTGACACAAAATAAACTACGAAAGTGGCTTTAACATATCTGAATA169440.23802550092609956No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA121300.17039951169933829No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG108810.15285384062658697No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT97300.13668485151150547No Hit
CAGTTGACACAAAATAAACTACGAAAGTGGCTTTAACATATCTGAA89650.12593830357663377No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCT88540.12437900054294651No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATCGTC100.009029244133.7425244
GCGAGCC2550.0123.2529144
GCGAATG500.0120.3682644
AGCGTCA6100.0119.4912644
GTATCGC800.0117.02470444
TGCACCG1150.0116.29784444
CGTTAGA900.0111.45209544
CGAAGAC1600.0104.4863444
CGTGCGC650.0102.8788544
TTACGAG1500.0102.5359344
ATGCGTC1100.094.1510443
GAGCGTC5900.091.1114543
ACGGTCC650.091.0471643
GCGGCAC1050.089.2406743
TAGCGGA302.3895804E-589.16167444
ACCACGT601.6370905E-1189.16167444
CTATCAT62450.088.5548944
CGTATCG451.8189894E-1187.6750443
TCGTGCG1300.087.25352543
AACGACA10600.085.14197543