FastQCFastQC Report
Tue 24 May 2016
ERR841061.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841061.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2950255
Sequences flagged as poor quality0
Sequence length24-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC1120313.797332772929798No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA726962.46405819158005No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT425061.4407568159362496No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT354661.2021333749116603No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC202640.6868558819491875No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA133070.45104575706167777No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA115870.39274571181135187No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACC114110.38678012578573717No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCG107560.3645786550654096No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC72920.24716507556126502No Hit
CTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGG66990.22706511809996083No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTC60780.20601609013458158No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTT57300.19422049958393428No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAG55200.18710247080337125No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC55090.1867296216767703No Hit
CTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAACC51080.17313757624340947No Hit
AAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTTT48120.16310454520033013No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC46600.15795244817820833No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAA44090.14944470901667822No Hit
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA43920.14886848763920407No Hit
CTTTCCGCGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAAC43920.14886848763920407No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCC43070.14598738075183332No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTT42920.14547895012465023No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACT42590.14436040274484746No Hit
AAAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTT41820.14175045885864102No Hit
CTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATT40170.13615772195962722No Hit
ATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCAC39690.13453074395264136No Hit
CCCTTTTGGCTCTCTGACCAGCACCATGGCGGTTGGCAAGAACAAGCGC38270.12971760068197496No Hit
CTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAGCT37200.12609079554140237No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTAC36680.12432823603383436No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCT35750.12117596614529931No Hit
CTCTTTCCTTGCCTAACGCAGCCATGGCTCGTGGTCCCAAGAAGCATCT35160.11917613901171253No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCT34700.1176169517550178No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACAT34520.1170068350023981No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA34430.11670177662608824No Hit
TCCCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCT34180.1158543922474498No Hit
CTCTTCCCTTTTGCGGCCATCACCGAAGCGGGAGCGGCCAAAATGAAGT32780.11110903972707445No Hit
CCCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTT31350.10626200108126246No Hit
CTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAA30230.10246571906496217No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGCA5900.0256.6821344
CTATCAT52650.0224.6039744
ACGATTC551.6916601E-10175.7552644
ACTTCTA23300.0155.5773644
ACATTGG14350.0150.4432444
TAATTCC4250.0132.6779844
CATGACC6250.0128.8871944
ACCACTC5900.0128.3410644
ACCGCGA1050.0122.7497144
CATCTCG402.5409443E-4120.8317544
TGTTTTT16350.0114.3036344
CCCATAC14600.0108.14165544
TGACGGC957.6306605E-9101.75304444
CCTTAGC147650.094.9907443
ACGTCGA856.1118044E-1094.7744
CAGGCAC14400.091.7426244
CGATATC208.0437755E-490.4474443
CCTATCA51350.086.4255943
ACAGGCC959.076066E-784.79420544
CGTATCC150.001043675684.71001442