Basic Statistics
Measure | Value |
---|---|
Filename | ERR841045.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1858401 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 10983 | 0.5909919333878964 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 7324 | 0.39410224165828583 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAA | 5768 | 0.3103743487008455 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5527 | 0.2974062110384142 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAA | 5022 | 0.270232312617137 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4603 | 0.2476860483824535 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 4299 | 0.23132789962984307 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAA | 4145 | 0.22304120585384962 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAA | 3373 | 0.18150011757419415 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3100 | 0.16681006951675123 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 2772 | 0.14916048796788206 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2295 | 0.12349326114224002 | No Hit |
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC | 1991 | 0.10713511238962958 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAATCGA | 25 | 1.1763987E-6 | 163.34407 | 44 |
GATCGGT | 25 | 2.405289E-4 | 122.50805 | 44 |
TCGAAAT | 35 | 6.2755917E-6 | 116.67434 | 44 |
CCCCCGG | 40 | 1.21855355E-5 | 102.09004 | 44 |
CTATCAT | 845 | 0.0 | 93.0288 | 44 |
CTATCCG | 140 | 0.0 | 87.50575 | 44 |
CCGTATA | 35 | 9.168144E-4 | 87.50575 | 44 |
CAATGCG | 20 | 3.342478E-5 | 83.3244 | 42 |
CGTGCGC | 75 | 3.5104676E-8 | 81.67203 | 44 |
AACGACA | 245 | 0.0 | 81.50433 | 43 |
CCGTGGG | 55 | 5.9163E-5 | 74.24731 | 44 |
GGCGATC | 55 | 5.9163E-5 | 74.24731 | 44 |
CCTATCA | 670 | 0.0 | 74.02885 | 43 |
CCCCCCG | 35 | 6.174805E-5 | 73.61681 | 43 |
GTAGACT | 125 | 3.6379788E-12 | 73.50484 | 44 |
CCTTAGC | 2495 | 0.0 | 71.772705 | 43 |
GTTCGGC | 135 | 0.0 | 71.5719 | 43 |
CTCGTCA | 30 | 1.0699114E-7 | 69.55996 | 41 |
CGGGTTC | 105 | 4.62569E-9 | 68.06003 | 44 |
GACCATA | 240 | 0.0 | 68.06003 | 44 |