FastQCFastQC Report
Tue 24 May 2016
ERR841033.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841033.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1293918
Sequences flagged as poor quality0
Sequence length24-50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC212761.6443082173677157No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA144171.1142128017385955No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT83990.6491137769163116No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT81010.6260829511607381No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC49550.38294544167404737No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCG38480.2973913339176053No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCC32260.24932028150160984No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA32000.24731088059676115No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAA27030.2089004094540767No Hit
CTCTTTTTCCGGCTGGAACCATGGAGGG23710.18324190559216272No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTC23410.1809233660865681No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACC22760.17589986382444636No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA22480.1737358936192247No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAG20140.15565128547558657No Hit
CGGCACAGCTGGTTTGAGCAACTGAACTGGAAACAAGATGCAGGACCC19830.1532554613198054No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCA18480.14282203354462958No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTAC17860.13803038523306732No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTT17730.13702568478064298No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTT15900.1228825937965157No Hit
TCCCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCT15890.1228053091463292No Hit
CTTTTCGATCCGCCATCTGCGGTGGAGCCGCCACCAAAATGCAGATTTT15760.12180060869390485No Hit
CTCTTTCCCATCTTGCAAGATGGCGGG15610.12064133894110755No Hit
CTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAGCT14890.11507684412768043No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC14770.11414942832544256No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13610.10518440890380998No Hit
CCTTTTGGCTCTCTGACCAGCACCATGGCGGTTGGCAAGAACAAGCGCC13610.10518440890380998No Hit
CTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAACC13480.10417970845138563No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAG13300.10278858474802885No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAATAC301.0913936E-11261.034144
CGACGGG100.0012202328261.0340644
CACGAAT100.0012202328261.0340644
CTATCAT12700.0155.1816744
CACGACA607.2759576E-12152.2698844
GTAATAT301.8680458E-4130.5170444
CATTGCG200.009706003130.5170344
ATGACGT200.009706003130.5170344
ACCCGGT301.9190338E-9124.0976543
ATCCACC652.3519533E-9120.4772644
CGTGCGC551.2244709E-7118.6518544
AGTCATA456.4476862E-6116.01514444
CGAGTAC353.4502154E-4111.8717444
AACTACC1400.0111.8717444
CTCTAGA1200.0108.764244
GAGTTAC851.2369128E-10107.4846144
TCGTGCG355.6079443E-9106.3694143
CCCAACG302.7838723E-7103.414743
CGACTAT207.176163E-493.07323543
CGAAATG1550.092.6249944