Basic Statistics
Measure | Value |
---|---|
Filename | ERR841017.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21164445 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 112038 | 0.5293689487250907 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 73186 | 0.34579692498433107 | No Hit |
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG | 45788 | 0.21634396744162204 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 43020 | 0.20326542935569536 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA | 32382 | 0.15300188594598157 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 27236 | 0.1286875228714951 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCTTAGC | 18260 | 0.0 | 75.92856 | 43 |
CTATCAT | 7805 | 0.0 | 64.882126 | 44 |
TCGTGCG | 4175 | 0.0 | 56.290184 | 43 |
ACCTTAG | 18565 | 0.0 | 52.625084 | 42 |
CCCTATC | 7100 | 0.0 | 49.20109 | 42 |
AACCTTA | 26740 | 0.0 | 48.60811 | 41 |
CAACCTT | 28215 | 0.0 | 40.431744 | 40 |
CGTGCGC | 2935 | 0.0 | 40.227913 | 44 |
CCGCTCT | 8520 | 0.0 | 39.733067 | 44 |
ACAACCT | 32005 | 0.0 | 38.953148 | 39 |
GACAACC | 32180 | 0.0 | 38.79521 | 38 |
CCTATCA | 8165 | 0.0 | 38.629543 | 43 |
GACGCTA | 7360 | 0.0 | 38.17213 | 31 |
CACCTTA | 31835 | 0.0 | 37.80376 | 25 |
ACCTTAC | 32485 | 0.0 | 37.25756 | 26 |
CTCGTGC | 5030 | 0.0 | 37.239605 | 42 |
CCGCGGC | 12120 | 0.0 | 37.204964 | 2 |
CGCGGCC | 12305 | 0.0 | 36.72766 | 3 |
CTACCAG | 33525 | 0.0 | 36.501602 | 32 |
AGACAAC | 34190 | 0.0 | 36.297817 | 37 |