FastQCFastQC Report
Tue 24 May 2016
ERR841017.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR841017.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21164445
Sequences flagged as poor quality0
Sequence length24-50
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC1120380.5293689487250907No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA731860.34579692498433107No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG457880.21634396744162204No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT430200.20326542935569536No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA323820.15300188594598157No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT272360.1286875228714951No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTAGC182600.075.9285643
CTATCAT78050.064.88212644
TCGTGCG41750.056.29018443
ACCTTAG185650.052.62508442
CCCTATC71000.049.2010942
AACCTTA267400.048.6081141
CAACCTT282150.040.43174440
CGTGCGC29350.040.22791344
CCGCTCT85200.039.73306744
ACAACCT320050.038.95314839
GACAACC321800.038.7952138
CCTATCA81650.038.62954343
GACGCTA73600.038.1721331
CACCTTA318350.037.8037625
ACCTTAC324850.037.2575626
CTCGTGC50300.037.23960542
CCGCGGC121200.037.2049642
CGCGGCC123050.036.727663
CTACCAG335250.036.50160232
AGACAAC341900.036.29781737