FastQCFastQC Report
Tue 24 May 2016
ERR840997.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840997.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1884826
Sequences flagged as poor quality0
Sequence length24-50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC223991.1883855591975068No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT168900.8961039374456846No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA148040.785430591471043No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC101070.5362298694945846No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA93410.4955895133025542No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT87350.4634380043569008No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA82380.43706952259784193No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA64910.34438192172646176No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC59260.3144056798876926No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA55700.29551799476450347No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAAT54490.28909830403443076No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG48270.2560979103641397No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC47080.24978433022464674No Hit
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG40950.2172614342119644No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAG40150.21301701058877584No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAA39620.21020507993841342No Hit
AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCT39080.20734009399276115No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCC38760.20564232454348572No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAA38170.20251206212138417No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCC35490.18829324298370248No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAA35230.1869138053061662No Hit
CTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGG34460.18282854756884723No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA33960.18017578280435437No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACT33020.1751885850471078No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA30410.16134115297645513No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGA30060.15948421764131013No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACAT29920.15874144350725214No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCG29730.15773339289674485No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA29350.15571729167573028No Hit
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG29000.15386035634058529No Hit
TTGAGTTCCAGCCAGGAGGACCAGGGGCTGGG26530.1407556984039906No Hit
ACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAAT26010.13799682304891803No Hit
CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCT25570.13566239005616434No Hit
ACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCA25490.13523794769384548No Hit
TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTGC25450.13502572651268605No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG25380.13465433944565705No Hit
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCA24080.12775715105797564No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAG23870.12664298985688865No Hit
AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTC23710.12579410513225095No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACC22340.11852552967754053No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAAG22270.11815414261051153No Hit
AAAAAAAAAAAAAAAAAAAAAAAA21760.11544832255072882No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTT21550.11433416134964182No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21350.11327305544384467No Hit
CTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATT20780.11024890361232284No Hit
ATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACC20660.10961224006884454No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAA19980.10600447998913429No Hit
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCGG19480.10335171522464143No Hit
ATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTT19370.102768106976453No Hit
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA19240.10207838813768486No Hit
ATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAACCACTC18870.10011534221196015No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGTTA100.0016534487235.8670844
CGTATCG151.76684E-5235.8670744
TTGCGTC151.76684E-5235.8670744
GTTTCGC306.019036E-9196.555944
CTATGCG255.7332545E-7188.6936644
CTATCAT33300.0139.8911444
CCAGAAT8700.0139.6224744
AATCGCA4150.0139.2468344
ACAACGG204.9984847E-6122.1519943
CCGTATC152.4341737E-4122.1519943
CAATCGT401.8189894E-12122.1519943
CTGGACG706.002665E-11117.9335444
CGTGCGC501.2714372E-7117.9335344
ACGCTTA1200.0117.9335344
CGGACTT602.733941E-9117.9335344
TAATTCC2350.0110.4058644
TAGTGCA552.244251E-7107.2123144
ACTGTAA1100.0105.494943
ATTAGAC451.0681582E-5104.8298244
ACTTCTA20000.0103.1918544