FastQCFastQC Report
Tue 24 May 2016
ERR840994.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840994.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1998535
Sequences flagged as poor quality0
Sequence length24-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC340641.7044485085325003No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA225581.128726792375415No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT130110.6510268771875399No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT125960.6302616666708364No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC77260.3865831721736172No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA50530.2528352017853077No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA45930.22981834193546774No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA36710.18368454893209277No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACC33650.16837333346676442No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC33190.1660716474817804No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCAAA32010.16016732256377797No Hit
CTTTTACCTCGTTGCACTGCTGAGAGCAAGATGGGTCACCAGCAGCTGT29210.14615706004648404No Hit
CTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAGCT27770.13895178218044718No Hit
CTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAACC27490.13755075592871777No Hit
CTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCC27270.13644994958807327No Hit
AATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATAC26580.13299742061059727No Hit
AAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTTT24740.12379067667066126No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC23430.1172358752786416No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA23150.11583484902691221No Hit
TCTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGC21650.10832935124979047No Hit
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTAC20600.10307550280580526No Hit
CCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTCTCGCA20560.10287535619841533No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGTACA100.0011238082268.3325244
ACGATAA356.9958332E-9191.666144
AATCGCA3850.0191.6660944
CATGACC2000.0181.1244744
CTATCAT21250.0166.6818544
ACCGTAA152.3736671E-4122.927743
GAACGTT551.04006176E-7121.9693444
ACGAACA1200.0111.8052244
CCCAGTT1800.0104.3515444
ACATTGG4450.0102.5090744
AAGTAGC1600.0100.624744
CTATGAC551.5250502E-597.5754744
TTAAGCC1050.093.659243
ACTCGAC207.4533577E-492.1957743
AACGATA357.3806586E-787.80550443
ACTTCTA14750.086.4121744
GCGTATT251.016695E-683.2091342
AATACTT303.090281E-883.2091242
GGGGTAG653.4941786E-582.5638644
TAAGCCA2150.081.12379544