Basic Statistics
Measure | Value |
---|---|
Filename | ERR840991.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 921048 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 3166 | 0.34373887137261033 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 2450 | 0.26600133760672623 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 2099 | 0.2278925745455177 | No Hit |
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAA | 2078 | 0.2256125630803172 | No Hit |
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTCCG | 1669 | 0.18120662549617392 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 1386 | 0.15048075670323371 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA | 1306 | 0.1417949987405651 | No Hit |
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAA | 1263 | 0.1371264038356307 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 1222 | 0.13267495287976305 | No Hit |
AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG | 1160 | 0.12594349045869488 | No Hit |
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG | 1110 | 0.120514891732027 | No Hit |
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA | 1026 | 0.11139484587122496 | No Hit |
CTCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAACC | 1005 | 0.10911483440602444 | No Hit |
TCAGTTCTTTGACCATTCGTTGGAGCTCCGGTTTTCAGCCTCTTTC | 989 | 0.10737768281349072 | No Hit |
AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCT | 962 | 0.10444623950109007 | No Hit |
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG | 952 | 0.10336051975575648 | No Hit |
ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTG | 951 | 0.10325194778122314 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 932 | 0.10118908026508933 | No Hit |
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA | 928 | 0.10075479236695589 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGCTTG | 55 | 0.0 | 220.04646 | 44 |
GTCGTAT | 10 | 0.002034547 | 220.04645 | 44 |
AATAGCC | 25 | 8.091065E-7 | 176.03717 | 44 |
CTCGAAA | 60 | 0.0 | 165.03485 | 44 |
ACTGGCG | 20 | 7.333369E-5 | 165.03484 | 44 |
TAATAGG | 60 | 0.0 | 146.69765 | 44 |
TCCGAAC | 15 | 0.0068432656 | 146.69765 | 44 |
GGGGTAC | 15 | 0.0068432656 | 146.69765 | 44 |
TAACTCG | 15 | 0.0068432656 | 146.69765 | 44 |
CTAGTAC | 55 | 1.4551915E-11 | 140.02957 | 44 |
CGATACG | 25 | 1.7838881E-4 | 132.02788 | 44 |
CTATCAT | 370 | 0.0 | 124.89123 | 44 |
CGAACTC | 15 | 2.5820936E-4 | 120.34017 | 43 |
CGATCAT | 25 | 1.12700945E-7 | 120.340164 | 43 |
TGGTAAA | 75 | 1.8189894E-12 | 117.358116 | 44 |
TCGTGCG | 115 | 0.0 | 115.107994 | 43 |
GACCGCC | 80 | 1.8189894E-12 | 110.023224 | 44 |
GGGAATA | 40 | 8.388455E-6 | 110.023224 | 44 |
CTGGTAA | 50 | 0.0 | 108.306145 | 43 |
ACTTCTA | 200 | 0.0 | 104.52207 | 44 |